Salvia splendens (scarlet sage): 121772297
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Entry
121772297 CDS
T07627
Name
(RefSeq) ATP-dependent DNA helicase Q-like 4A isoform X1
KO
K10901
bloom syndrome protein [EC:
5.6.2.4
]
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03440
Homologous recombination
sspl03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
121772297
03460 Fanconi anemia pathway
121772297
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sspl03032
]
121772297
03400 DNA repair and recombination proteins [BR:
sspl03400
]
121772297
Enzymes [BR:
sspl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
121772297
DNA replication proteins [BR:
sspl03032
]
Eukaryotic type
DNA Replication Termination Factors
Other termination factors
121772297
DNA repair and recombination proteins [BR:
sspl03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecQ family DNA helicases
121772297
Bloom's syndrome complex (BTR)
121772297
FA (Fanconi anemia) pathway
121772297
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RQC
RecQ_Zn_bind
HRDC
Cob_adeno_trans
JIP_LZII
bHLH_IRO3
APG6_N
Motif
Other DBs
NCBI-GeneID:
121772297
NCBI-ProteinID:
XP_042025268
LinkDB
All DBs
Position
16:7303923..7313681
Genome browser
AA seq
1196 aa
AA seq
DB search
MKQNHSSGSNSDGGINCKFNWSEHAKAHNNFSSQDKLLSSKFLYSLSSQRPQVVEATGAR
HLLCQVQNDRMQGQQLEKAWQLLSSLQLSSRSYSKPGKSIPLTKNVNASVSGGSRQTTQL
FQSDLKSMAAGRSQNHKNFSKGDVQVGGPSKSLNSCYTGNTVEVKEGRQYPTVQNGSHSV
HHTAIKSTMQTSTGNDLRSSFAVDIDDDDILEDIDVDQIVLNHYQSTPQPSLSKIPPITP
LTVKNNYPNDEINLPPELCLICSHGCKIGLCSEASDHLKMLKDTLIAISNDLIDNVDDMS
PEKVEALRQERQQLKEQIKQLEKHIPNMSVNEERRTSHFSASTATPMAFHYETPGTVPYT
IGPTRLDSQFQENNSLYDSDRWGSSSCYTTDGIGFSTPYERTPYVPKNIEVNYIDGSNDE
KWSSQGFPWMKKLEAENRKTFGNHSFRPNQREVINATMSGHDVFVLMPTGGGKSLTYQLP
AHICPGITLVISPLVSLIQDQIMHLLQANIGAAYLSASMDWAEQQEILRELNSEYCKYKL
LYVTPEKVAKSDILLRHLENLHAREYLARIVIDEAHCVSQWGHDFRPDYQSLGILKQMFP
SVPVLALTATATISVKEDVVRALGLVDCIVFRQSFNRPNLRYSVVPKTKKCIEDIDKFIK
ENHFDECGIIYCLSRMDCEKVAEKLKEYGHRAGFYHGSLEATQRTMIQRQWSKDEINIIC
ATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQPASCVLYYSYSDYIRVKHM
ITQGAYEQTPFASGHSRSNMTSSGKLLETNTENLLRMVSYSENDVDCRRLLQLIHFGEKF
DPINCLKTCDNCSKNHICVEKDVTEIAKQLVELVKITRQQFSTAHLLEVYRGSLSQYVKK
HGHEALSLHGAGKHLAKGEASRVLRHLVIEDILFEEVKKSDVYGSVTSVVKVNDSKARNI
FVGGQTIRLRFLSTAKAFKSSRSEATPAKGSLTSGKLTSQQMDNTAQPQPVVDVDLSRKL
FESLRKLRSALVKEGGDGLCAHHVFTNGTLQQIGIKVPRTKEELVEINGIGKMKLNRYGD
RLLETIEATIREHNKEKSSSSSNDSLDSKRRRDAASIPDGNDDFTESTARTKKRLVKKQD
KTSQQQQQQQQQQQQAYQFELSDIDFDDDLFDVEVDQSTGGTGTVLPSWSGSTNGR
NT seq
3591 nt
NT seq
+upstream
nt +downstream
nt
atgaagcaaaatcattcgagcgggagcaactccgatggaggcattaactgtaaattcaat
tggtctgagcatgccaaagcacataataacttctcgagccaagataagttattgagctcg
aaattcctgtactcactgtcaagtcagagacctcaagttgttgaagcaacgggtgctagg
cacttgctttgtcaagttcagaacgacaggatgcagggtcaacaacttgaaaaggcctgg
cagctgctttctagcctccagttatcttctagaagttatagtaaacctgggaaaagcatt
cctttaacaaagaatgtcaatgcatctgtatctggaggttcaagacaaaccacacagcta
ttccaatctgatttgaagagcatggctgcagggcgatctcaaaatcataaaaactttagt
aaaggtgatgtacaagttggtgggcccagtaaaagcctgaacagttgttatacaggcaac
actgttgaggttaaggaaggtagacagtatccaaccgtgcagaatggctcacactctgtc
catcacactgcaattaaatctactatgcaaacaagtactgggaatgacctcaggtcttcc
tttgctgttgacatagatgatgatgacattttggaggatattgatgtggaccaaatagtt
ttaaatcattatcagtcaacacctcaaccatcactctctaaaattccaccaattactcca
cttacggttaaaaacaattatcctaacgatgaaataaatttacctccagagctgtgcttg
atatgcagtcacggttgtaagataggtctgtgctctgaagcttcagaccaccttaaaatg
ttgaaggataccctgatagctatatcaaatgatctaatagacaatgttgatgatatgtct
cctgagaaagtagaggcccttcgccaggaaaggcagcagctgaaggaacaaattaagcag
cttgagaagcatattcctaatatgtccgtcaacgaggaaagaagaacatcacatttttca
gcctctacagcaacacctatggcttttcactacgaaactcctggcacagtgccgtacaca
attggtcccacaagacttgattcccagttccaagaaaacaattcattatacgactctgat
agatggggttcatcatcatgctatacaacagatggtataggtttttcaactccatatgag
aggacaccttatgtgcccaagaatattgaagttaattacatagacggttcaaatgacgaa
aaatggagcagtcagggatttccttggatgaaaaaactagaggctgaaaacagaaaaaca
tttggtaatcattcctttcggccaaaccaaagagaggtgatcaatgctacaatgagtgga
catgatgtgtttgttcttatgccaactggaggggggaaaagtctgacttaccagctccct
gcacatatatgccctggtataactttggtcatttcacctcttgtttctcttatccaagac
caaatcatgcatcttttgcaggcaaacataggtgctgcttatctcagtgccagcatggac
tgggctgagcagcaggagattcttagggagcttaattcagaatactgcaaatacaagctg
ctgtatgtcacccctgagaaagtcgcgaaaagtgacatcctactgcggcatttggagaac
ctacatgctcgtgagtatcttgctaggattgtaatcgatgaggctcattgtgttagccaa
tggggacatgactttagaccagattaccagagtcttggcattttgaagcagatgtttcca
tctgtacctgtactggccttaaccgctactgctactattagtgtaaaggaagatgtcgta
cgagctcttggtctagtggattgcatcgttttcagacaaagttttaaccgtccgaacctg
cgatattcggtcgttcccaagacaaaaaagtgtatagaagatattgacaaatttatcaaa
gagaatcatttcgatgagtgtgggatcatttattgtctttctagaatggattgcgaaaaa
gttgctgaaaagttaaaggagtatggacacagggcaggattttaccatgggagtctggag
gctacacagcgtacaatgattcaaagacagtggagtaaggatgagattaacattatatgt
gcaacagtggcctttggcatgggtatcaataagcctgatgttaggtttgtcattcaccat
tctcttccgaaatctattgaaggctaccatcaggagtgtggtcgtgctggtagggatggc
cagcctgcatcttgtgtgttatactacagctatagtgattatatccgagtgaagcatatg
attactcaaggtgcgtatgagcaaactccctttgcatccggacatagtcgtagcaacatg
acatcctctgggaagttattggagacaaacactgagaatcttctaagaatggttagttac
tccgagaatgatgttgactgtcgacgcctgctacagcttattcattttggagaaaaattt
gatcctattaactgcctgaaaacatgtgacaattgttccaagaaccacatctgtgttgag
aaagacgtgactgagatagcaaagcagctggttgaattggtaaagataacaagacagcag
ttttcaactgcccatctgttggaagtctacagaggttccttgagccaatatgtcaagaaa
cacggacatgaagcactgagcctgcatggagctggaaaacatttggctaaaggtgaagca
tctcgtgtgttgcgtcatttggtaattgaagatatcctttttgaggaagtgaaaaagagc
gatgtatatggatcagtgacctcagtggtgaaggtgaatgactccaaggcccgcaatatc
tttgttggaggccagacaattagattaagattcctatctactgctaaagctttcaagtca
agtagatcagaagccactccagcgaaaggctcactgacatcaggaaagctaacctctcaa
cagatggataacaccgcccaaccacagccggtagtggatgtggatctgtcacgcaagctg
tttgaatcgttgcgaaaacttagatcagcccttgtgaaggaaggtggagatgggctgtgt
gcacatcatgttttcacaaatggtacattgcagcagatcggcataaaagtacctagaact
aaagaggaacttgtagagatcaatggcatcggcaaaatgaagctgaacagatacggagac
aggttgctggaaaccattgaagccaccatcagggaacataacaaagagaaaagtagcagc
agcagcaacgacagcctcgactcaaaaaggagaagagatgctgccagtatccctgatggg
aatgatgacttcaccgagagcactgcacggaccaagaaaaggctggtgaagaaacaggac
aaaacctcacagcaacagcagcagcagcagcagcagcagcaacaggcgtaccagtttgag
ctcagtgacatcgactttgacgatgatctatttgatgtcgaagtcgatcaaagtaccggt
ggtacaggtacagttctaccttcatggtcagggtcaaccaatggaagataa
DBGET
integrated database retrieval system
