Salvia splendens (scarlet sage): 121772356
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Entry
121772356 CDS
T07627
Name
(RefSeq) zinc finger CCCH domain-containing protein 41-like
KO
K13192
RNA-binding protein 26
Organism
sspl
Salvia splendens (scarlet sage)
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
sspl01009
]
121772356
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121772356
03041 Spliceosome [BR:
sspl03041
]
121772356
Protein phosphatases and associated proteins [BR:
sspl01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
121772356
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
121772356
Spliceosome [BR:
sspl03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
121772356
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Nup35_RRM_2
RRM_Nup35
zf_CCCH_4
DUF5323
DUF2735
Motif
Other DBs
NCBI-GeneID:
121772356
NCBI-ProteinID:
XP_042025358
LinkDB
All DBs
Position
16:complement(3348177..3355203)
Genome browser
AA seq
941 aa
AA seq
DB search
MELKVSPEKPGFSSSDVASDTEEKEISEGEDEDDDRNHKHRRREARSQSQEGDSLDNCLT
RPYRKRNRPFENGYSYRDGEPQAGEHWRNHNMTSDRDFPARFDKRRFNQGSFSKAPSDLN
QRIRGSQVLPGEVGFVRGRGREPVPWGIHDSRFGLVDVASQIVQPGPVPSAMFAGRGLSN
VSSAHGASWNAFGMVPGLPNGGLDSLHPLALQGPLRPAISPAVNVGLPRQRCRDFEERGF
CLRGDMCLMEHGVNRIVVEDVQSLSQFNLPVSLPGSQLLGASSAQVALPVNNKVFHPKSS
KPGMIVDGYSLNGGVEGGSMAGASASDVYDPDQPLWENDNPETSAALIALNQANVDETES
FVDRDFPNRHNVESVEGFNDDRPLRNANAGGSHSSSAWGRISSSKQENRNGKILYTDRSN
VPNQGKRINVDGDGSLFKQSFAKKQSDFVRDIRTPAQRGLRTLYVNYIPLKDNKREILLS
HFQKFGEVVDIYIPMQTEQAFVQFSKREEAEEALKAPDAVMGNRFIKLWWANRNNIPDEG
ISGNTAAQIAPRGISLHPVSNQFILDKGKENPHPATGKDSNSNASVGQQPVPDHPKSAIT
NGSKAPPLQPKKLENLEILKEELRKKQEMLDQKRNEFKRQLDKLQKQAVGSKDLPASDSP
TKRIKGETPPNQAKAESSNSSPRDSMSIENTQSAQHSVTHTSTSTMHIYEPSKPSFRSQA
PIGAPFVANRFKLDNRPTVFKVVPPLPSDLANVAALEEHFSSYGDLASVVLEESELQETN
DASVSSSNISARISFTTRRSAEKAFSHGKSWQGHKLQFSWLSSVNTGKESDSSGNLPAIS
KASVNTGKEVDSSGSLPAASSASVNTGKEVGSSGNLPAASNAASDINAQPSGDDASADIQ
KFPVSGSDELGNHRVEDDADSTEQEKDSKSTATSSSDENQL
NT seq
2826 nt
NT seq
+upstream
nt +downstream
nt
atggagctgaaggtttctccagaaaaaccaggattttcatcttctgatgttgccagtgat
actgaggagaaagaaattagtgaaggagaagatgaagatgatgatcgtaatcacaagcat
cgtaggcgggaggctcgatctcaatctcaggagggggattctctcgataattgtttgaca
agaccatatagaaaaagaaaccggccttttgaaaatggttactcttacagggatggtgaa
cctcaagcaggtgaacactggagaaatcataatatgacttcagacagggattttcctgca
aggtttgacaaaagacgtttcaaccagggatcattttccaaagctccttcagatttgaac
caaaggatcagaggcagccaagttctacccggtgaagttggttttgtcaggggcagagga
agggaacctgttccttggggcattcatgattcaaggtttggattggtcgatgttgcatct
caaatagttcaacctggacctgttccttctgctatgtttgctgggaggggcttgtcaaat
gtttctagtgcacatggtgcatcttggaatgcatttgggatggttccaggcttacctaat
ggtggactcgattcacttcacccccttgctttgcaaggaccgcttagaccagctatcagt
ccagcagtgaatgttgggcttccacggcaacggtgtagagactttgaggaacgtggtttt
tgcttaagaggagacatgtgcctgatggaacatggcgtaaatcgtattgttgttgaagat
gttcagagcctttcacaattcaatctccctgtttcacttcctggctcgcaacttcttgga
gcatcttctgcacaagtagctttacctgttaacaacaaagtttttcatccaaaaagtagc
aagcctggaatgattgtagatggttacagcttgaatggtggtgttgagggaggttccatg
gcaggggcatcggcatctgatgtgtatgatccagatcaacctttatgggaaaatgataac
ccagagacatcggcagcactaatagcacttaatcaagcaaatgttgatgaaactgagtcc
tttgtggacagagactttcccaaccggcataatgttgaatcagttgaaggttttaatgat
gaccgtccactcagaaatgccaatgctggtggatcacatagttcttctgcgtggggaaga
ataagcagttcaaaacaggaaaacaggaatgggaaaatactatacactgaccgttccaat
gttcccaatcaaggaaaacggataaatgttgatggagatggttcactttttaagcaatca
tttgccaagaaacaaagtgattttgttcgtgatattcgaacaccagctcaaagaggactc
cgtaccttatatgtcaattacattcccctgaaagacaataagagggaaattcttctctca
cattttcagaaattcggtgaggttgttgacatttatattcccatgcaaactgagcaggct
tttgttcaattttctaaaagggaagaagcagaagaagcactaaaggcacctgatgctgta
atgggcaaccggtttatcaagctttggtgggcaaatcgaaataatattcctgacgaaggg
ataagtggcaatactgctgcacaaattgcacctcgtggaatttcacttcatccggtttct
aatcaatttattcttgacaaaggaaaagaaaatccgcatcctgcaactggaaaagatagt
aactccaatgcttctgttggtcaacagccggttcctgaccatcccaagtcagcgattacg
aatggttccaaagcccctcccttacagccaaagaaattggagaacttagagattttgaag
gaagaacttcgtaagaagcaggagatgctggatcagaaacgaaatgagttcaagcgccag
ttagacaaactccagaaacaagctgttggcagcaaggatttgcctgcgtcagattcaccc
acaaaaaggattaaaggtgaaacaccacctaatcaagcaaaagctgaaagttccaattca
tcaccaagagatagcatgtccattgagaatactcaatctgcacagcattctgtgacacat
acttcaacttcaaccatgcatatttacgagccttcgaaaccttcttttcgttcgcaagca
cctattggggcaccatttgtagcaaacagattcaagctggacaatcggcctacggtgttc
aaagttgttccgccgttaccatctgacctagcaaatgttgctgcgctggaggagcacttc
tcatcgtatggcgatcttgcttcggtggtactggaggagtcagagcttcaagagaccaat
gatgcttcagtatcatcttctaacatttcagctcgtatttcctttacaacccggcgatct
gctgagaaggccttctcacatggtaaatcatggcaaggtcacaagttgcaattttcgtgg
ctatcatctgttaatactggcaaagaatccgacagctctgggaatctcccagccatttca
aaagcgtctgttaacactggcaaagaagttgacagctctgggagtctcccggctgcttca
agtgcgtctgttaacactggcaaagaagtcggcagctctgggaatctcccagctgcttca
aatgcagcatcggatattaatgctcaacctagcggagatgatgcatcagcggatattcag
aaatttcccgtctcaggatcagacgagcttgggaaccacagagtagaagatgatgcagat
tctacagaacaggagaaagattcaaaatccacggcgacctcaagttcggacgaaaaccag
ctttag
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