Salvia splendens (scarlet sage): 121772513
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Entry
121772513 CDS
T07627
Name
(RefSeq) katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.4-like isoform X1
KO
K18643
katanin p80 WD40 repeat-containing subunit B1
Organism
sspl
Salvia splendens (scarlet sage)
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
sspl04812
]
121772513
Cytoskeleton proteins [BR:
sspl04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Microtubule severing proteins
121772513
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
Katanin_con80
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
WDR55
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Beta-prop_SCAP
Beta-prop_EML
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_DCAF4
Beta-prop_EIPR1
NBCH_WD40
eIF2A
Beta-prop_SPT8
Beta-prop_IFT140_1st
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_Vps41
Beta-prop_HPS5
Beta-prop_WDR19_1st
Beta-prop_RIG_1st
Beta-prop_VPS8
Beta-prop_DCAF12
VPS8_N
PROPPIN
PAN2_N
Motif
Other DBs
NCBI-GeneID:
121772513
NCBI-ProteinID:
XP_042025576
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All DBs
Position
16:complement(12066649..12076043)
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AA seq
808 aa
AA seq
DB search
MTTTTKRAYKLQEFVAHSSSVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGH
SSGIDSVSFDSSEILVAAGAASGTIKLWDLEEAKIIRTLTGHRSNCISLDFHPFGEFFAS
GSLDTNLKIWDIRRKGCIHTYKSHTRGVNTIRFTPDGRWVVSGGEDNTVKLWDLTAGKLL
HDFKCHEGQVQSIDFHPHEFLLATGSADRTVKFWDLETFELIGSTAPETTGVRSMIFNPD
GKTLLCGLHENLKVFSWEPIRSHDTVDVGWSKLSDMNIHEGKLLGCSYNQSCVGVWVVDI
SRIEPYAIGKTARLTGDNDAKPNSGGSSVTTEDNVKANLGRLSISNNADAVKETRSLTRL
SVPQNSDKDSKSSASPPITPQKSNISVVSKTMPANAPSISSSTNPKRQAPKAQSVANVLF
NRSDVIPVIVPRNNPRAEQVTEFRKEDAPVKAVPLHLQSKTSDVSKVINTRDVLEGANIP
TQPDNEPPKSMDSNVPDRTFSASVKNSMSGLAADRKARDDKHMISRRVDTNSAIDTLARY
QHESYEFRGNSMNVEASHVEGQRGGRTQLILPNWEQKGRSSYRPGLASRNISGRLKARSY
PSPDENESVSASDEDTIADLVHQHDQFVGSMRSRLGKLQIVLNYWQRHDIRGALSAISKM
GDQSVLADVMSLLAEKTDVVTLDICSCLLPLLAGLVESDMDRHQDIALDMLIKLVRVFGS
VVYSSLSAPASVGVDIEAEQRLERCNLCYVELEKLKCSLPALSRYVFLKKILLQVDAKSQ
LVSAVLFCRRGGNIAKSAQELNLALQEV
NT seq
2427 nt
NT seq
+upstream
nt +downstream
nt
atgacgaccaccaccaaacgagcttacaagctacaggaatttgtagctcattcttcaagt
gtgaattgcctaaagatcgggaggaaatcatcaagggttcttgtgactggaggagaagat
cacaaggtcaatctctgggctattggcaagccaaatgctatactgagtttgtcaggccat
tccagtggaattgattcagttagctttgattcatcggagattttggttgctgctggagca
gctagtggtaccattaagctctgggatttggaggaggctaagatcatacgtaccctcact
ggtcaccgctccaattgcatatccttggactttcatccttttggagagttctttgcatcc
ggttccctggacacaaatctcaaaatatgggatatcagaaggaaggggtgtatacacacc
tacaagagtcatactcgaggagttaacacaatcaggtttactcctgatgggcggtgggtt
gtttctggtggagaggacaacactgtgaagctatgggatttaactgctggcaagcttttg
catgatttcaaatgccatgaaggccaagttcagtccatcgatttccatccacatgagttt
ttgctggcaacaggctcagctgatagaactgtaaaattctgggatcttgaaacatttgag
ttaattggctcgactgcacctgagaccactggagtacgcagtatgatcttcaatcctgat
gggaaaaccctgctttgtggcttgcatgagaatttgaaagttttctcatgggagccaatc
agaagtcatgatactgtagatgtggggtggtctaaactatcagatatgaatatccacgaa
ggaaagcttcttggatgttcttataatcagagttgtgttggagtttgggttgtagacatt
tcgcggattgaaccatatgcaattggaaaaactgctcgattaactggtgataatgatgca
aaaccaaattctggtggttcatctgtaaccacagaggacaatgtgaaggccaatttgggc
aggctttctatttcaaataatgctgatgcggtgaaggaaactagatctctaacaaggctc
tctgtcccccaaaattcagataaggattctaaatcaagtgcatctcctccaatcactcct
caaaagtcaaatatcagtgtggtttcaaagacaatgccggccaatgcaccatcaatttcc
agttcaacaaacccgaagcggcaagccccaaaggcccaatcagtagcaaatgtcttattc
aacagatctgatgtaatacctgtgattgtgccaagaaataatcctagagctgagcaagtt
actgaatttagaaaagaagatgctccagttaaagctgtacctttgcatttacagtccaaa
acttctgatgttagtaaagttattaacaccagagatgttttggagggggctaatattcct
actcagcccgataatgagcccccaaagtccatggattcgaatgtcccggatagaactttc
agtgcatcagttaagaactcaatgagtggacttgctgcagacagaaaagccagagatgat
aaacatatgatttcaagaagagttgatacaaattctgctattgatacccttgctagatat
cagcatgaaagttatgaatttcgaggaaatagtatgaatgtggaggcatctcatgtagaa
ggtcaaagaggaggtagaacacaactgattctccctaactgggaacagaaaggaagaagt
tcttaccgtcctggtcttgcttcaagaaatatctctgggagattaaaggctagaagttat
ccttcacctgatgaaaacgagtcagtctctgctagtgatgaagatactattgctgatttg
gtacatcaacatgatcaattcgttggctcaatgaggtctcgattaggcaaactgcagata
gtccttaactactggcagaggcatgatataagaggggctcttagtgcaatcagcaaaatg
ggtgaccaaagtgtgcttgctgatgtaatgagcctattggcagaaaaaactgatgttgtc
acattagatatttgttcatgtcttttgccactcctggcgggacttgtggaaagtgatatg
gacaggcatcaagatattgcattggatatgctcataaaattggtgagagtatttggctct
gtggtttactcttcactgtcagcgcctgcatctgttggtgtagacatcgaggcagagcaa
aggctggagcgctgcaatctctgctatgtggaacttgagaaattgaaatgctcccttcca
gctctttcaaggtatgtttttctcaagaaaatactgcttcaggttgatgcaaaatcccaa
cttgtgtctgctgttttgttttgcagaagagggggtaatatcgccaaatcagcacaggaa
ctgaatctggcgcttcaggaagtttga
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