Salvia splendens (scarlet sage): 121773637
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Entry
121773637 CDS
T07627
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7-like
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121773637
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sspl03041
]
121773637
Enzymes [BR:
sspl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121773637
Spliceosome [BR:
sspl03041
]
Complex C
Other components
Step II factors
121773637
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
AAA_19
SLFN-g3_helicase
AAA_30
Flavi_DEAD
T2SSE
AAA_24
Sigma54_activ_2
nSTAND3
ABC_tran
AAA_16
Microtub_bd
TsaE
SRP54
AAA_7
ATPase
PipX
Motif
Other DBs
NCBI-GeneID:
121773637
NCBI-ProteinID:
XP_042026465
LinkDB
All DBs
Position
17:7333751..7340041
Genome browser
AA seq
1087 aa
AA seq
DB search
MGVCADRKGRTPKESSQEKEHNGEYGRKRGRYNRSTRTPGMSDWDDGRWEWEESPRRDGH
DSSSRHCRPSPSPMLVGASPDARLVSPWLGGRTPNSSAASPWDSYAPCPTLIRARGVCFR
SASSQSGGSSNQVDTKDGENGPESTSADQNHEITESMRLEMEYSSDRAWYDREEGSSVYD
ADGSSAFLGDEASFNKKEAGLAKRLVRRDGTKMTFAQSKKLSQLTADNAQWEDRQLLRSG
AVRGTEVQTEFDDEEERKVILLVHDTKPLFLDGRIAFTNQAEPVVPLKDPTSDMAIISRK
GSNLVKEIREKQSMNKSRQRFWELAGSNLGNILGVEKTADQIDADTAKVGDQGEIDFKQD
AKFAQHLKKGEGVSNFAKSKTFAQQRQYLPIFSIREELLQVIRENQVIVVVGETGSGKTT
QLTQYLHEDGYTNNGIVGCTQPRRVAAMSVAKRVSEEMETELGDKVGYAIRFEDVTGPNT
VIKYMTDGVLLRETLKDSDLEKYRIIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVT
SATLNAQKFSDFFGNVPIFHIPGRTFPVQTLYSKTPCEDYVEGAVKQAMAIHITSAPGDI
LIFMTGQDEIEATCYALQERMEQLASKKEAPKLLILPIYSQLPADLQAKIFENAEDGARK
CIVATNIAETSLTVDGILYVIDTGYGKIKVYNPRMGLDALQVFPVSRANADQRAGRAGRT
GPGTCYRLYTESAYLNEMLPSPVPEIQRSNVGNVVLLLKSLKVDNLLDFDFMDPPPQENI
LNSMYQLWVLGALNNVGDLTDIGWKMVEFPLDPPLAKMLLMGKQLGCIDEVLTIVSMLSV
PSVFFRPKDRVEESDAAREKFFVPESDHLTLLNVYQQWESNHCRGDWCNDHFLHVKGLRK
AREVRSQLLDILQTLRIPLMSCGLDWDVVRMAICSAYFHNSARLKGVGEYVNCRNGMPCH
LHPSSALYGLGYTPDYVVYHELILTAKEYMQCATAVEPQWLAELGPMFFSVKDSDTSMIY
HKKKQKQEKTAMEEEMESLRKVQEDKERERRENEKKKRQKEQQQVSLPGLKLKEGASTYL
RPKRLGL
NT seq
3264 nt
NT seq
+upstream
nt +downstream
nt
atgggggtttgtgctgacaggaaagggagaacccctaaagagtcatctcaagaaaaagag
cacaatggagagtatgggagaaaaagaggtagatacaacaggtctacgagaacacctggc
atgtctgattgggatgatggaagatgggagtgggaagaatccccacgtcgtgatggtcat
gattctagtagcagacattgtcggccttctccatcccctatgcttgttggggcctcgcct
gatgcacggcttgtttctccatggttgggagggcgtactcccaattcttcagctgcgtct
ccttgggatagctatgctccttgccctactctaattcgggcacgtggggtgtgttttagg
tctgcaagttcccaatctggtgggagctccaatcaggttgacactaaggatggagaaaat
ggtccagaaagcacatccgcagaccagaatcatgagataacagaaagtatgcgtttagag
atggaatacagttctgatcgtgcctggtatgatcgagaagaaggcagcagtgtttatgac
gctgatggctcctctgcctttcttggtgacgaggcatctttcaataaaaaagaagcaggg
ttggctaagagactggtgagaagagatgggactaagatgacttttgcacagagcaaaaaa
ctttcgcagctcactgctgataatgctcagtgggaggatagacaacttttgagatcaggt
gctgtcagaggaaccgaggtgcagactgagtttgatgatgaggaagaacgaaaggttatt
cttcttgtgcatgatacaaaacccctttttctcgatgggaggattgctttcacgaatcaa
gctgagccagttgtgccattgaaagaccctacgtcagatatggctataatatcacggaag
ggctccaatctggttaaggaaattcgtgaaaaacaaagcatgaacaagtccagacaacgg
ttttgggagcttgctggttctaatcttggcaatattcttggtgttgagaaaactgcagat
cagattgacgcagatactgctaaagttggcgatcaaggtgaaattgatttcaaacaggat
gcaaaatttgcacaacatttgaaaaaaggagagggagtcagcaattttgctaaatcaaaa
acatttgcccaacagcgacaatatttgcccatcttctctatacgagaagaattactgcag
gtaatccgcgaaaatcaagtgatcgtagtggttggtgaaactggttcaggaaagacgaca
caattaacacagtatcttcatgaagatgggtacacaaacaatggcattgttggctgcaca
caaccaaggcgtgtggctgccatgagtgttgcaaaaagagtgagcgaagagatggaaact
gaacttggtgataaagttggatatgccatacgttttgaagatgtcactgggcctaacact
gttattaagtacatgactgatggtgtgttgctgagggagactctaaaagattctgacctg
gaaaaatatcgcatcattgtgatggatgaagcacacgagcggtccctaagcacagatgta
ctttttggtatcctcaagaaagtcgtggccagacgtcgtgatttcaagctcattgtgact
tctgctactctcaatgctcaaaagttttcagatttttttggaaacgtacctatatttcac
atccctgggaggacattcccggttcagacattgtacagtaagacaccttgtgaagattac
gtcgagggtgcagtaaagcaggctatggcgattcacatcactagtgctcctggcgacatc
ctaatcttcatgactggtcaagatgagattgaggcgacatgttatgctcttcaagaacgt
atggaacaactcgcttccaaaaaggaagctccaaagctgttaatccttcccatatactcc
cagcttcctgctgacttgcaagcaaagatttttgagaatgctgaagatggagctcgcaag
tgtattgttgctacaaatattgctgagacatcgttgactgtggatgggatcttatatgtc
attgacacgggttatggtaagataaaagtctataacccccgtatgggtttggatgctctc
caagtgtttccagttagtcgtgctaatgctgatcagcgtgctggacgagctggaagaact
gggccggggacttgctaccggctttatacagagagcgcttatctgaacgaaatgctaccc
agtccagtcccagaaatccagagaagcaacgtgggaaatgtggttttgctgctcaagagt
ttaaaagtcgacaacctattagattttgacttcatggatcctcctccacaagaaaacatc
ctcaactccatgtaccagctgtgggtgttgggtgctctgaacaacgttggggatctgaca
gatataggttggaagatggttgagtttcccttggatcccccattggccaagatgctccta
atgggcaagcagctcggatgcattgacgaggttctaacaattgtgtccatgctttcagtg
ccctccgttttctttcgacccaaggaccgtgtggaagagagcgatgccgcaagggaaaag
ttctttgtcccggaatctgaccacctcacgctcctaaacgtgtaccaacaatgggagtct
aaccactgccggggggattggtgcaacgaccatttcctgcatgtgaaaggtttgcgcaag
gctagagaggtacgatcccagttgctcgacattcttcagacactcaggatcccactcatg
tcgtgtgggctcgactgggatgtagtgaggatggccatatgctccgcatacttccacaac
tcggctcgcctgaagggtgtcggggagtatgtcaactgcagaaatgggatgccctgccac
ctccatcctagcagtgccttgtatggattggggtacactccagactacgtcgtttatcat
gagctgatcctcacagcgaaagaatacatgcagtgtgccacggctgttgagccgcagtgg
ctggctgagctcggacccatgttcttctcggtgaaggactcggatacgtcgatgatctac
cacaagaagaagcagaagcaggagaagactgccatggaggaggagatggagagtttgagg
aaggttcaagaagataaggagagagaaaggagagagaatgagaaaaagaagaggcagaag
gagcaacagcaagtttccttgcctggattgaagttgaaggaaggggcttcaacgtatctc
agacccaaaaggcttgggctataa
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