Salvia splendens (scarlet sage): 121774900
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Entry
121774900 CDS
T07627
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7-like isoform X1
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121774900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sspl03041
]
121774900
Enzymes [BR:
sspl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121774900
Spliceosome [BR:
sspl03041
]
Complex C
Other components
Step II factors
121774900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
AAA_19
SLFN-g3_helicase
Flavi_DEAD
AAA_30
T2SSE
nSTAND3
AAA_16
AAA_24
Sigma54_activ_2
AAA_7
ATPase
TsaE
ABC_tran
SRP54
Motif
Other DBs
NCBI-GeneID:
121774900
NCBI-ProteinID:
XP_042027734
LinkDB
All DBs
Position
17:complement(7066357..7072783)
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AA seq
1089 aa
AA seq
DB search
MGVCADREEKTPRDSSRGQEKEHNGEYGRKRGRYDRSTRKPGMFDWDDGRWEWEESPHSD
GHDSSSRHCRPSASPMLVAVSPDVRLVSPWLGGRTPNSSAASPWDSYATSHTPIRARGKS
FRSSSSQYGGSSNQAESTNGENGPESTSADQNHEITERMRLEMEYNSDRAWYDREEGSTV
YDAADGSSAFLGDEASFQKKEAELAKRLVRRDGTKMTLAQSKKLSQLTADNAQWEDRQLL
RSGAVRGTEVQTEFDDEEERKVILLVHDTKPPFLDGRIAFTNQAEPVMPLKDPTSDMAII
SRKGSNLVREIREKQSMNKSRQRFWELAGSNLGNILGVEITADQIDADTAEVGDQGEIDF
KQDAKFAQHLKKGEGVSNFAKSKTLAQQRQYLPIFSIRDELLQVIRENQVIVVVGDTGSG
KTTQLTQYLHEDGYTNNGIVGCTQPRRVAAMSVAKRVSEEMETKLGDKVGYAIRFEDVTG
PNTVIKYMTDGVLLRETLKDSDLEKYRIIVMDEAHERSLSTDVLFGILKKVVARRRDFKL
IVTSATLNAQKFSDFFGSVPIFHIPGRTFPVQTLYSKTPCEDYVEGAVKQAMAIHITSAP
GDILIFMTGQDEIEATCYALQERMEQLASKKEAPKLLILPIYSQLPADLQAKIFENAEDG
ARKCIVATNIAETSLTVDGILYVIDTGYGKIKVYNPRMGMDALQVFPVSRANADQRAGRA
GRTGPGTCYRLYTESAYLNEMLPSPVPEIQRSNLGNVVLLLKSLKIDNLLDFDFMDPPPQ
ENILNSMYQLWVLGALNNVGDLTDIGWKMVEFPLDPPLAKMLLMGEQLGCINEVLTIVSM
LSVPSVFFRPKDRVEESDAAREKFFVPESDHLTLLNVYKQWESNHCRGDWCNDHFLHVKG
LRKAREVRSQLLDILKTLRIPLTSCGLDLDVVRMAICSAYFHNSARLKGVGEYVNCRNGM
PCHLHPSSALYGLGYTPDYVVYHELILTAKEYMQCATAVEPQWLAELGPMFFSVKDSDMS
TIKHKKKQKQEKTAMEEMESLRKVQEDKERERKENEKKKRQKEQQQVSLPGLKLKRGTST
YLRPKRLGL
NT seq
3270 nt
NT seq
+upstream
nt +downstream
nt
atgggggtttgtgctgacagggaagaaaagacccccagagattcatctcgtggtcaagaa
aaagagcacaatggagagtatgggagaaaaagaggtagatacgacaggtctacgagaaaa
cctggcatgtttgattgggatgatggaagatgggagtgggaagaatccccacacagtgat
ggtcacgattctagtagcagacattgtcggccttctgcatccccaatgcttgttgcggtc
tcgcctgatgtacggcttgtttctccatggttgggagggcgtactcctaattcttcagct
gcgtctccttgggatagctatgctacttcccatactccaattcgggcacgtgggaagtct
tttaggtcttcaagttcccaatatggtgggagctccaatcaggctgagtcgacgaatgga
gaaaatggtccagaaagcacatccgcagaccaaaatcatgagataacagaaagaatgcgt
ttagagatggaatacaattctgatcgtgcttggtatgatcgagaagaaggcagcactgtt
tatgacgctgctgatggctcctccgcttttctcggtgacgaggcatctttccagaaaaaa
gaagcagagttggctaagagactggtgagaagagatgggactaagatgactcttgcacag
agcaaaaaactttcgcagctcactgctgataatgctcagtgggaggatagacaacttttg
agatcaggtgctgtcagaggaactgaggtgcagactgagtttgatgatgaggaagaacga
aaggttattcttcttgtgcatgatacaaaacccccttttctcgatgggaggattgctttc
acgaatcaagctgagccagttatgccattgaaagaccctacgtcagatatggctataata
tcacggaagggctccaatctggttagggaaattcgggaaaaacaaagcatgaacaagtcc
agacaacggttttgggagcttgctggttctaatcttggcaatattcttggtgtcgagata
actgcagatcagattgacgcagatactgctgaagttggcgatcaaggtgaaattgatttc
aaacaggatgcaaaatttgcacaacatttgaaaaaaggagagggagtcagcaattttgct
aaatcaaaaacgttagcccaacagcgacaatatttgcccatcttctctatacgagacgaa
ttactgcaggtaatccgcgaaaatcaagtgatcgtagtggttggtgatactggttcagga
aagacaacacaattaacacagtatcttcacgaagatgggtacacaaacaatggcattgtt
ggctgcacacaaccaaggcgtgtggccgccatgagtgttgcaaaaagagtgagcgaagag
atggaaactaaacttggtgataaagttggatatgccatacgttttgaagatgtcaccggg
cctaacactgttattaagtacatgaccgatggtgtgttgctgagggagacgctaaaagat
tcagacctggaaaaatatcgcatcattgtgatggatgaagcacacgagcggtctctaagc
acagatgtacttttcggtatcctgaagaaagttgtggccagacgtcgtgatttcaagctc
attgtgacttctgctactctaaatgctcaaaagttttcggatttttttgggagcgtacct
atatttcacattcctgggaggacattcccggttcagacattgtacagtaagacaccttgt
gaagattacgtcgagggtgcagtaaagcaggcgatggcgattcacatcactagtgctcct
ggcgacatcctaatcttcatgactggtcaagatgagattgaggcgacatgttatgctctt
caagaacgcatggaacaacttgcttccaaaaaggaagctccaaagctgctaatacttccc
atatactcccagcttcctgctgacttgcaagcaaagatttttgagaatgctgaagatgga
gctcgcaagtgtattgttgctacaaatattgctgagacatcgttgactgtcgatgggatc
ttatatgtcattgacacgggttatggtaagataaaagtctataacccccgcatgggtatg
gatgctctccaagtgtttcctgttagtcgtgctaatgctgatcagcgtgctggacgagct
ggaagaactgggccggggacttgctaccggctttatacagagagcgcttatctgaacgaa
atgctacccagtccagtcccagaaatccagagaagcaacctgggaaatgtggttttgctg
ctcaagagtttaaaaatcgacaacctattagattttgacttcatggatcctccaccacaa
gaaaacatcctcaactccatgtaccagctgtgggtgttgggtgctctgaacaacgtcggg
gatctgacagatattggttggaagatggttgagtttcccttggatcccccattggccaag
atgctcctaatgggtgagcagctcggatgcatcaacgaggttctaacaatcgtgtcaatg
ctttcggtgccctccgttttctttcgacccaaggaccgtgtggaagagagcgatgccgca
agggaaaaattctttgtcccggaatccgaccaccttacgctcctaaatgtgtacaagcaa
tgggagtctaaccactgccggggggattggtgcaacgaccatttcctgcacgtgaaaggt
ttgcgcaaggctagagaggtacgatcccagctgctcgacattcttaagacactcaggata
ccactcacgtcgtgtgggctcgacttggatgtagtgaggatggccatatgctctgcatac
ttccacaactcagctcgcctcaagggtgtcggggagtatgttaactgcagaaatgggatg
ccctgccacctccatccgagcagtgccttgtacggattggggtacactccagactacgtc
gtttatcatgagctgatcctcacagcgaaagaatacatgcagtgtgccacggcagttgag
ccgcagtggctggctgagctcggacccatgttcttctcggtgaaggactcagatatgtcg
acgatcaagcacaagaagaagcagaagcaggagaagactgccatggaggagatggagagt
ttgaggaaggttcaagaagataaggagagagaaaggaaagagaatgagaaaaagaagagg
cagaaggagcaacagcaagtttccttgcctgggttgaagttgaagagagggacttcaaca
tatctcagacccaaaaggcttgggctataa
DBGET
integrated database retrieval system
