Salvia splendens (scarlet sage): 121775437
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Entry
121775437 CDS
T07627
Name
(RefSeq) THO complex subunit 4D-like
KO
K12881
THO complex subunit 4
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03013
Nucleocytoplasmic transport
sspl03015
mRNA surveillance pathway
sspl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121775437
09122 Translation
03013 Nucleocytoplasmic transport
121775437
03015 mRNA surveillance pathway
121775437
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121775437
03041 Spliceosome [BR:
sspl03041
]
121775437
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
121775437
TREX complex
121775437
Spliceosome [BR:
sspl03041
]
Complex C
Other components
EJC/TREX
121775437
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
121775437
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
RRM_3
Motif
Other DBs
NCBI-GeneID:
121775437
NCBI-ProteinID:
XP_042028452
LinkDB
All DBs
Position
17:complement(8776920..8780141)
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AA seq
279 aa
AA seq
DB search
MASLDMSLDDMIKSRKNTVKGGRGQGRPRRGRGGPGGPSRGGRAPFGAPRRNPLGLNARP
SAHTIAKSFRRTKNLPWHSGLVEESLKSVGLSGLEAGTKLFISNLDVGVSNEDIRELFSE
IGELIRYAIHFDKNGRPSGSAEVVFARRSDAFQALKRYNNVQLDGKPMKIEIVGANAGIP
LSARVNVVGGANGKKRTVVMASGPARSRGGFTPANRGTGQRGRGGLNTGRGGGGRGGSRG
RGRGGGRGRGGAQWRKKVEKSADDLDKELDSYHAEAMQS
NT seq
840 nt
NT seq
+upstream
nt +downstream
nt
atggcctctttggatatgtctcttgatgacatgataaagagtagaaaaaatactgttaaa
ggaggcagagggcaaggcaggccacggcgtggaagaggagggcctggagggccatcccgt
ggtggaagggcaccatttggtgctcctcgcagaaatcctcttggactcaatgctcgacct
tcagctcacactattgccaagtcattccgcagaaccaagaacttaccatggcatagtggt
cttgttgaagaaagtctgaagtcagttgggctgtcagggttggaagctggtacaaagtta
tttatttcaaacttggatgttggggtttccaatgaagatataagggagctcttttctgag
attggagagttgattcggtatgctattcacttcgacaaaaatggacgcccaagtggttca
gctgaagtggtttttgcaaggcggagtgatgcatttcaagcactcaaacgttataacaat
gtccagttggatggaaagcctatgaagatagagatagttggtgccaatgcagggatccca
ttgtcagctcgtgttaatgtagtgggaggagcaaatggaaagaagaggacagttgtcatg
gcgtctggacctgctcgttcaagaggtggttttactccggcaaatcgtggcactggacaa
aggggtcgtggaggtttgaacactggacgtggaggtgggggtcgtggcgggagccgtggc
cgtggtcgtggtgggggccgtggtcgtggaggcgcacaatggagaaagaaggtcgagaaa
tctgctgatgaccttgataaggaactcgacagctaccatgctgaggcaatgcagtcttag
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