Salvia splendens (scarlet sage): 121775920
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Entry
121775920 CDS
T07627
Name
(RefSeq) DNA topoisomerase 3-alpha isoform X1
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03440
Homologous recombination
sspl03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
121775920
03460 Fanconi anemia pathway
121775920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sspl03032
]
121775920
03400 DNA repair and recombination proteins [BR:
sspl03400
]
121775920
Enzymes [BR:
sspl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
121775920
DNA replication proteins [BR:
sspl03032
]
Eukaryotic type
DNA Topoisomerases
121775920
DNA repair and recombination proteins [BR:
sspl03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
121775920
FA (Fanconi anemia) pathway
121775920
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim
Zn_ribbon_GRF
Zn_ribbon_Top1
Zn_ribbon_GRF_2
zf-CCHC
Toprim_4
Motif
Other DBs
NCBI-GeneID:
121775920
NCBI-ProteinID:
XP_042028947
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Position
18:13967528..13986124
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AA seq
913 aa
AA seq
DB search
MAGGGGGRSIRALNVAEKPSVAKQVAGILSKGGMRARDGRSRYNRIFEFDCVVRSQLIQM
SFTSVTGHLMELEFDDRYRKWHSCDPLDLYHAPVKKYVPQDKLDIQKTLEEEARKCQWLI
LWLDCDREGENIAFEVVDICTRANRNINIWRARFSALTDRDIYDAITRLSPPNQLQAEAV
DLRQEIDLRIGASFTRFQTMLLRDAFIIDSTTDDTNVVLSYGPCQFPTLGFVVERFWEIQ
AHQPEEFWTINCTHNSEEGTATFNWMRGHLFEYTCAAIIYEMCVQEPTATVTNVRHQEKP
KYPPYPLSTIELEKRASRYFHMSSEKTMKVAEDLYQAGFISYPRTETDSFSSTTDLQTMV
QEQQEHPVWGTYAQRLLDPEARLWRNPSSGGHDDKAHPPIHPTKYSAGESGWSQDHHKVY
ELVVRHFLACVSQPAIGAETTVEIDIAGEQFAASGRVIIAKNYLDVYRFESWGGSIIPTY
RYGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAQIGTDATMHDHIKKLIDRFYATKD
CSMRFSPTKLGEALVMGYDEMGHELWKPRLRAEMESDMTAVSEGRKRKDEVLQTCLQQMK
ACFLDARLNKGKLFEAMAVFFERSNRPTGNEQNAVGDVVRKCGLCEESDMVLKKKPDGNF
MVGCLGYPQCRNVVWLPGSVSDAVVTTNICSTCSPGPVLMIQFKFRRLEIPPNYTTDHLG
CIGGCDDTLKQLVEICGTGSRNNSNAPGRVQRHTSSSSTAQQSDSRNQTSWQTRHSSGSY
HSENARGHNAQPQEAVAGDGESTISCTSCGAPCNLRTANTLANRGRKFYSCRAQGCNFFV
WEDSANGVTATQGSNNRSASSGGRRGGRGRGSRSRGRGNDMSFVSAIGEPISGRCFVCGD
PAHFANACPNRGR
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
atggcaggcggcggcggagggaggtcaataagggcgctgaacgtggcagagaagccttca
gtggctaaacaggtggctggtatactgtcgaagggcgggatgagagcaagagacgggcgg
tccagatacaataggatattcgaattcgactgcgtggttaggagccagttaattcaaatg
tccttcacctcagtcactggccacctaatggagctcgaattcgacgacaggtatcgcaag
tggcattcctgtgaccccctcgatctctaccacgccccagttaagaaatatgtgcctcag
gataaactggacatccagaaaacactggaggaagaagctaggaagtgtcagtggcttatc
ttgtggcttgattgtgacagagaaggagaaaatatagcatttgaggtggttgatatttgc
acaagagcaaatcgaaatattaacatttggagagcacgtttttctgccctgactgatagg
gacatctatgatgcaatcacgaggctttctccgcctaatcaattgcaggcagaagctgtt
gatcttcgacaagaaatagatctgcgaattggagcgtctttcacacggtttcagactatg
ctattgagagatgcattcatcattgattccactacagatgatacaaatgttgttttaagt
tatggtccttgccagttccctacccttggttttgttgtggaaaggttctgggaaatccaa
gctcatcaacctgaagagttctggactattaactgtactcataattcagaagaaggcact
gctacctttaattggatgcgaggtcatttatttgaatacacttgtgcagcaataatatat
gaaatgtgtgtccaggaacccactgcaactgtaacaaatgttagacaccaggagaagcct
aagtatcctccttatcctttgagtacaatagagctggaaaaacgtgcttcgcgttacttc
catatgagttcagaaaagaccatgaaagtggctgaagatctgtatcaagctggtttcatc
agttatccccgcacagagactgatagcttttcatcgacaacagatttgcaaactatggtg
caagagcagcaagaacacccagtatggggtacttatgctcagcggttactggatcctgaa
gcacgtctttggagaaatcctagtagcggaggacatgatgacaaagctcaccctcccatt
cacccaacaaaatattcagccggagagtctgggtggagtcaggatcaccataaggtttat
gaattggttgtccgacatttcctggcttgtgtttctcaaccagccattggtgctgaaact
accgttgaaattgatattgcgggtgaacaatttgctgcatctggaagagtgataattgct
aaaaattatttggatgtatatcgatttgaatcatggggaggctctattatcccgacgtat
cggtatgggcaacagtttataccaactacattgactcttgattctggagtgaccagacct
cctcctcttctaagtgaggctgatttactaagttgtatggacaaggcacaaattggaaca
gatgcgactatgcatgatcatataaaaaagcttatagatcgattttatgccactaaagac
tgtagcatgcgtttctcacctacaaaacttggtgaggcgctagtcatgggatatgatgag
atgggtcatgaattgtggaaaccacgtctccgtgctgagatggagagtgatatgacagca
gttagtgagggtagaaagagaaaagatgaagttctgcaaacttgcctacaacagatgaaa
gcctgctttctggatgctagattaaacaaaggaaagctatttgaagccatggctgttttt
tttgagagatcaaatagacctactggcaatgagcagaatgcagttggggatgttgttcgg
aaatgtggcctttgtgaggaatcagatatggtcctcaagaaaaagccggatggaaacttc
atggttgggtgtttaggttaccctcaatgtagaaacgttgtttggctaccaggatcagta
tcagatgccgttgttaccacaaatatctgcagtacttgctctccaggaccagttcttatg
attcaatttaaatttcgtcgactggagatacctcctaactacactactgatcatctgggc
tgcataggtggttgtgatgatactttgaagcagctagtggaaatatgtggaactgggtcc
cgcaacaactccaatgcccctggaagagtgcaaaggcatacatcatcatccagcactgcc
caacaaagtgattctagaaatcagacatcttggcaaacaaggcactcttctggttcatat
cattctgagaatgcacgaggtcataatgcacaaccgcaggaagctgttgcaggagatgga
gaatctacaatatcatgcacctcctgcggcgcaccttgcaatttgcgaacagccaatact
ctagctaatagagggagaaagttttattcatgccgagctcaggggtgtaacttctttgtt
tgggaagatagtgcaaatggagtaacagcaacgcaaggaagcaataacagatcagcatcc
agtggtggcagaagaggtggtcgtggtaggggtagccggagtagaggaaggggaaatgat
atgtctttcgtgtctgctattggtgagccgatatcaggaaggtgtttcgtttgtggagat
ccagcacactttgcaaatgcttgccccaatcgcggcaggtag
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