KEGG   Salvia splendens (scarlet sage): 121776136
Entry
121776136         CDS       T07627                                 
Name
(RefSeq) DNA-directed RNA polymerases IV and V subunit 4-like
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
sspl  Salvia splendens (scarlet sage)
Pathway
sspl03020  RNA polymerase
sspl03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:sspl00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    121776136
  09124 Replication and repair
   03420 Nucleotide excision repair
    121776136
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sspl03021]
    121776136
   03400 DNA repair and recombination proteins [BR:sspl03400]
    121776136
Transcription machinery [BR:sspl03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     121776136
DNA repair and recombination proteins [BR:sspl03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      121776136
SSDB
Motif
Pfam: RNA_pol_Rpb4
Other DBs
NCBI-GeneID: 121776136
NCBI-ProteinID: XP_042029213
LinkDB
Position
18:4496920..4501040
AA seq 215 aa
MSEKGGKGGRSSLKSPVGNGDSSGKQKKGKKVQFDSEDIMETDTPISNGKADTPAAKGGK
GDKTANGSKKPTGKGSTTAERRLDQELPPNSTCLMDCEAAEILQSIQDQMVILSQDPDIK
LPISFDTGLTYAKRGGNYAKPETVKKIFEPLKKHGVSDCEICLITNICPESVDEVFAVVP
ALKPKMSKLRDPLRIALAELANLKEALANLKNSTT
NT seq 648 nt   +upstreamnt  +downstreamnt
atgtcggagaaaggtggaaaagggggcaggtcttctctaaaatcacctgttgggaatggt
gatagctcaggaaaacagaaaaaggggaaaaaagttcagtttgattccgaagatattatg
gaaactgatacaccaatatctaatgggaaagccgatactccggctgcaaaaggtggaaaa
ggtgacaaaactgcaaatggctctaaaaaacccacagggaaagggtcaaccacggcggag
cgaagacttgatcaagagctccctcccaattctacatgtttgatggactgtgaagctgcg
gaaatattgcaaagcatccaagatcagatggttatattgtctcaagatcctgatataaaa
ctaccaatttcatttgatacgggactgacatatgccaagagaggtgggaactatgcaaag
cctgagaccgtgaagaaaatatttgagcctctgaagaagcatggtgtttctgactgtgag
atttgcttgattaccaatatttgtcctgaatctgtagatgaagtttttgccgttgtccca
gctctgaagcctaagatgagcaagttgagggatcccctaagaattgctttggctgaactg
gcaaacctcaaggaagcattggctaaccttaaaaactccacaacatag

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