Salvia splendens (scarlet sage): 121776238
Help
Entry
121776238 CDS
T07627
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
121776238
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sspl04131
]
121776238
Membrane trafficking [BR:
sspl04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
121776238
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Vps8
Beta-prop_VPS8
VPS8_N
TPR_Vps41
Beta-prop_WDR36-Utp21_1st
Beta-prop_EML_2
Beta-prop_WDR3_1st
WD40_WDHD1_1st
Beta-prop_WDR5
TPR_VPS8_2
WD40_CDC20-Fz
ANAPC4_WD40
WDR55
Beta-prop_THOC3
WD40_Gbeta
Beta-prop_EML
Beta-prop_HPS5
Clathrin
WD40_Prp19
Beta-prop_LRRK2
WD40
zf_RING_Vps8
Beta-prop_RIG_2nd
zf-RING_2
EIF3I
AbiEi_3_N
Motif
Other DBs
NCBI-GeneID:
121776238
NCBI-ProteinID:
XP_042029332
LinkDB
All DBs
Position
18:complement(23150531..23160214)
Genome browser
AA seq
1888 aa
AA seq
DB search
MEHPIAVDVEMDIDSLLQSHGVESDSDEENRHRRTVDEILLNHSSPSPSPPSSPLKGDGD
DDESDASANLKDHGLSHSHSVPLVDSHNYRYNSAVNSSRANFSGRVLPPLFGNGAVRSNA
KPGAALAAAAAASRSIATPHATAIKLRRANTGVPSLQSSLSETAENFNSAASSPTAAPSE
VDLSQSQEEGVQLPVGNIDSDSTDVGGGDGDSDHAASSSEDWNRQKSDEDATLETSYNDE
ECTMLTSKARHASNIQSEEDQIPVIEQVSSPSAGEENEQCAEIRAADESGDVALPSPASS
SVDYGEDIIRGEEASNPENTVAESGECDYSSGHNDAAQLLEDLVSQGEDEDTYTKLQEKS
DSSVKPLDLAEEIEKKQAFTGLHYEEGVAAQPMRLEGVKKGSTVLGYFDVRSDNALTRII
SSQAFRKDHGSPQVISVHLNYIAVGMSKGSIFVVSSKYTVHHVDNMDTKMMPLGLQGDRS
LVPVTSMCFNQQGDILFAGYGDGHYTVWDVQKASALKVITEHRAPVVHMLYLGQDTQVTR
QYNVVSGDSKGVVKLIRFTVVPWLNRISYTKPMKLLDETTSRVVCASPLLYNEGYGGSIL
SSQSSSTVSTSSISSMMSGMVDEGVVIFITHQSALVAKVIPTVEVYAQIPKPEGIREGSM
PYAAWRCGSQSLNSSSENALVEASDKASLLAIAWDHKVQVAKLLKSELKVLEKWTLESEA
VGLAWLGDQMLAILTSTAQLCLYAKDGNLIHQTSFSVDGFRGDNLISHHIYYTNSSGNPE
KAYHNSISVRGATMYILGQEHLIVSRLLSWKERIEVLRKAGDWIGALNMAMALYDGQSYG
LVDLPKNLDDLQRTVMPYLAELLQAYVSEVFSYLSVACYNQNTKEDQYNEIKEQFIRVGG
VAVEFCVHIRRTDILFEDIMSKFDDAHQKETFLELLEPYILKDMLGSLPPGIMQALVEHY
SKRGWLQRIEQCVLHMDILSLDFNQVVRLCREHRLDCALIYLFNKGLDDFRTPLEELLLV
LRDSTRENATSLGYRVLVYLKYCFQGLAFPPGHGNLSPRRVTSLRKELLDFLLEDSSAPN
SWAVTSLSSSGAYANMLHLLQLDTEATLQVLKLAFVDVELSPSGKPSEEATDINMESDDS
DKLVQRVVDILAGILDAGYFMSDSPVCSTETNSVEVWPSKEDIGHMYDFIAYYVAYGKAT
VSKDILSQIIQYLTSEANISDTLSEKMTDIFRRREKQLLSLIQVVPETQWDAPYLLHLSE
QAQFHKVCGYIHAISLQLVAAVDSYIKAIQEPVYAFSFIYEMLRLLDGEESDAFESALIS
RIPYLVKLSREATYFLITDHFSGRTAYILSDLRSHPESLFLYLKTVIEVQTTGTLDISCL
QEVDTFNYPSPTNSKLQSNGVQAYLEAISTSLKLLHNNRVNVTDEMMELYFELLCRFDRK
SVLKFLETSESYRVEHCLSLCQEYGITDAASFLLERVGEVGSALLLILSHLSEKFVMLDE
EIQKAISSPAVDSLNALLKKKVVAEILDIVRACIGLCQRNSPRLQPEESESLWFQLLDSF
CEPLIDSGNAREALKDSPTGSVNPEEQAQTFKWKVSKYGKCSHMARKLFSIFIKEIVEGM
IGYVRLPRIMLKLLSENGNQEFGDFKLTILGILGRYDFERRILDTAKSLIEDDTYYTMSL
LMKGASHGYAPRSLVCCICSSLLGKNSLDSSIQVYSCGHATHLHCQLEGNKASFSGALVG
CPICTPGRKARKSSGMHKLAENGLVSSSPSSMKQPRSTPLLHLHDHEFGDNSFGSHPSRF
ELLHSLEGDHKLIQMENTPQLKLAPPALYHEKLKKGIDNSSGGSTSRVSTTEKTNSKQLR
DVKLKGSSSVRFPLKSSIIFGKEKIRKR
NT seq
5667 nt
NT seq
+upstream
nt +downstream
nt
atggagcatccgatcgccgtggatgtggaaatggacatcgactctcttcttcaatcgcac
ggcgtggaatccgactccgatgaagaaaatcgtcaccgccgcaccgtcgacgaaattctc
ctcaaccattcttctccctccccttctcctccttcttcccctctcaaaggtgacggcgat
gacgatgaaagcgacgcctcggctaatttgaaagatcacggactatcgcattcccactcc
gttcctttggttgattcgcataactatagatacaattcagctgtgaatagtagtagagct
aacttttcgggtagggttttgccgccgttatttggtaatggcgccgtcagatctaatgcg
aagcctggggctgcactggcggccgctgctgctgcctctcgttcaattgcaacgccccac
gccactgctatcaagttgagaagagcaaataccggcgttccctctcttcagagctcgctt
tctgaaactgcggaaaattttaatagtgctgcttcttcaccaactgcagcgccttccgaa
gttgatctcagccagtctcaagaagaaggagttcagcttcctgtcggaaatatcgattct
gactccacggatgttggtggtggtgatggtgatagtgatcatgcggcatcttcttctgaa
gattggaatcggcagaaatctgatgaggatgcgactctggagacatcttataatgatgaa
gaatgcacaatgctaactagtaaagctcgtcacgcttctaatattcaaagtgaagaggat
caaattcctgtaattgagcaagtctcatctccttcggccggtgaagagaatgagcaatgt
gctgaaattagagctgctgatgaatctggtgatgtggctttacctagcccagcttcgagt
agtgttgattatggcgaagacataattaggggagaagaagcaagtaatcctgaaaacact
gtggctgaatccggggaatgtgattattctagtggacataatgatgctgcacaattactt
gaagacttggtttcacaaggtgaagatgaggacacctatacaaagttgcaggagaaatct
gattcttcggtgaagccacttgacttggctgaagaaattgagaagaaacaagcatttaca
ggtttgcactacgaagagggtgtagctgcacagccgatgagactcgaaggtgttaaaaag
ggctctactgtgttaggctactttgatgttcgttctgacaatgctctcacccggatcatc
tcttcgcaagcctttcggaaagatcatggatccccccaagtcatatctgtacatttgaac
tacattgcagttggaatgtcgaaaggatcaatttttgttgtgtccagcaagtatactgtg
catcatgttgataacatggatactaagatgatgccccttggtttgcaaggggatagatct
cttgtccctgtaacttccatgtgcttcaatcagcaaggagatatactctttgcaggatat
ggtgatggtcattacactgtttgggatgtgcagaaggcctcagcacttaaggttatcact
gaacacagagctccagtagttcacatgctatatctgggccaagatactcaagttactcgt
caatataatgtggtcagtggtgatagcaagggtgtggtcaagttgattcggtttaccgtg
gttccgtggctcaataggatatcttatacaaaacctatgaaacttttagatgaaactact
agcagagtagtatgtgcttctccattgctatacaacgaaggatatggaggttcaatactg
tcttcgcagagtagctccacagtttctacaagtagtattagtagcatgatgagtggcatg
gttgatgaaggtgttgtcatatttatcacacatcagtctgctcttgtggcaaaagtcatt
cccactgtggaagtatatgctcaaattcccaaacctgagggcatcagggagggttccatg
ccgtatgctgcctggagatgtgggtctcagtcgctcaattcatcctctgaaaatgctctt
gttgaggcgtcagataaagcttcattgcttgccattgcttgggaccacaaagttcaggtt
gctaagctattaaagtcagagttaaaagtgcttgaaaagtggactcttgaaagtgaagct
gttggcctggcatggctgggagatcagatgctggccatcctaacatcgacagctcagctc
tgcttgtatgcaaaagatggaaatttgatccaccagactagcttttccgtggatggcttt
cgaggggataatttgatttctcatcacatatattatacgaattcttctgggaaccctgag
aaagcttatcacaacagtatttctgttaggggtgctactatgtacatacttggacaggag
catctcattgtttctcgccttctctcatggaaggaacgaattgaagttctacgaaaagcg
ggtgactggattggtgccttaaacatggcgatggcactttatgatggccaatcatacggt
cttgtagatcttcccaaaaacttggatgacttgcaaagaactgttatgccttatcttgcg
gagttacttcaggcatatgttagtgaagtattttcttacttatccgttgcttgttacaac
caaaatacaaaagaggaccagtacaatgagattaaggagcaattcatccgtgttggtggt
gttgctgttgaattttgtgtgcatatcaggagaactgacatattgtttgaagatatcatg
agtaaatttgacgatgctcaccaaaaagagacattcttggaactcttggagccatacatt
ttgaaagatatgctgggatctcttccacctgggatcatgcaagcattagtggagcactat
agcaagagaggttggttgcagcgaattgaacagtgcgtcctgcacatggatattctgtcc
ttggattttaatcaggttgtccgcttatgcagggaacacaggttggattgtgcgttgata
tatctatttaacaaaggcttagatgattttaggacacctcttgaggagctcctgctagta
ttacgggatagcacgagagaaaatgccacttccctcgggtatagggtgcttgtctacctg
aagtattgcttccaaggtcttgcttttcctccaggacatggaaatctttctcctcggcgt
gtgacctctcttagaaaagaacttttagatttcctattagaggattcaagtgctccaaat
tcatgggctgttacgagtttatcatcaagcggagcctatgcaaacatgcttcatctttta
cagttggatactgaagccactctacaggttctaaaattggcctttgtagatgttgaacta
tctccatcgggcaaaccttccgaggaagcaactgatatcaacatggagtcagatgatagt
gacaaattggtccaaagagtggtggatattcttgctggtattcttgatgctggttacttc
atgtccgacagtcctgtctgcagcactgaaacaaattcggtggaagtttggccttcaaaa
gaagatataggccacatgtacgattttatagcttactatgtagcttatgggaaagctact
gtatctaaagatattttaagtcaaatcatacaatatttgacttcagaggccaatatctcg
gatactctgtcggagaagatgactgatatcttcagaaggagagagaaacaactgctttct
ctgatacaagtggtgcctgagactcagtgggatgctccttatttgttgcatttgtctgag
caggcacagtttcacaaggtgtgtggctacatacatgcaatcagtcttcaattagttgct
gctgtggacagttatataaaagcaatacaggagcccgtatatgcattctcttttatctat
gaaatgttaaggctgcttgatggtgaagaatctgatgcttttgaatcagctcttatttct
cgcattccatatcttgtcaaactgagcagagaagcaacttactttctaattactgaccat
ttttccggaagaactgcatatattttgtctgaccttcggtctcacccagaaagccttttc
ctttatctaaagactgttattgaggtccagacaactggtacccttgacatctcttgtttg
caagaagttgatactttcaattatccttctccaacaaactctaagctgcagtcaaatggt
gtccaagcttatctggaagcaatatctacttccctgaaacttttacataacaaccgagta
aatgtgactgatgaaatgatggagctgtattttgagctcttatgtcgatttgatcgcaaa
tcagtactcaagttcttggaaacttctgaaagctatagagtggaacactgcttgagttta
tgccaggaatatggcataactgatgctgcttcattcttattagaaagggttggagaggtt
ggaagtgcccttcttctaattctttctcatctcagtgagaagtttgtcatgctcgatgaa
gaaatccagaaagcaatttcttctccagctgtggatagtctaaatgcacttctgaagaaa
aaagtggtggctgaaatacttgacatcgtccgtgcttgtattgggttatgtcagagaaat
agtcctcgtctgcagcctgaagagtcagagtccctctggtttcagctgcttgattcgttt
tgtgagccattgatagattccggaaatgctagggaagcacttaaggactcacctactgga
tcagtaaatccagaagaacaggcgcagacattcaaatggaaagtctccaagtatggtaaa
tgttcacacatggcgaggaaactgttctctattttcattaaagaaattgtcgagggaatg
attggatatgttcggctcccacgaatcatgttgaaacttctttctgaaaatggcaatcaa
gaatttggtgattttaagcttaccatactggggatacttgggcgatatgattttgaaaga
agaattctggatactgcaaaaagtttgattgaggatgatacatattatacaatgagtttg
ctcatgaaaggagcttctcatggttatgcccctagaagtcttgtttgttgtatctgtagc
tctctccttggtaaaaattctctagattctagcattcaagtatatagttgtggtcatgca
acacatctccattgtcagctcgagggaaacaaggcctcatttagtggggccttagtagga
tgtcccatttgtactccaggaaggaaagctcgaaagtctagtggtatgcataaacttgca
gagaatggattagtgagtagctctccatcaagtatgaagcaaccacgtagcacacctctt
ttgcatcttcacgatcacgaatttggagataactcctttggctcccatccatcaaggttt
gagctcctgcatagccttgaaggagatcataaattgattcagatggaaaacacgcctcag
ttgaaacttgcaccgccagctctctaccatgaaaagttaaaaaagggaattgataactca
tccggtggaagcacgagccgtgtttctacaacagaaaaaacaaatagtaagcaactgagg
gatgtgaaactgaaaggatcgtcatctgtgcgattccccctgaaatcgagtattatcttc
ggcaaggaaaagattaggaagaggtga
DBGET
integrated database retrieval system
