Salvia splendens (scarlet sage): 121777159
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Entry
121777159 CDS
T07627
Name
(RefSeq) pre-mRNA-processing factor 39-like isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
sspl
Salvia splendens (scarlet sage)
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sspl03041
]
121777159
Spliceosome [BR:
sspl03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
121777159
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_7
UTP6_C
TPR_12
Motif
Other DBs
NCBI-GeneID:
121777159
NCBI-ProteinID:
XP_042030244
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Position
18:7523157..7532488
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AA seq
804 aa
AA seq
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MMEQTSSVAQSDGSANAPDAAGSILSPSENAASLAPNTGEIDPSASGVNADPGRTHVAPE
NVSEQEIHTAVAYDAGENLTGLANLSANSTQVSVYDASLNGNDVSTIRDGSAGIISENGV
ASADAMETAAMHQPSDGSALSAEEERLWSIVTTNSLDFDAWTALIDETERTSEGNISKIR
KVYDTFLVEFPLCYGYWKKYADHEARISPVDKVAEVYERAVQGVTYSVDMWLHYSVFAIG
TYGDPDTIRRLFERALAYVGTDYLCFPLWDKYIEYEISQQDWSHVATIYTRVLEIPNQQL
DRYFEGFKELVASRPLSELRTAEEAAAAADATSQDNVEEIPPNVAEQSSKFANDSLKDAE
ELEKYIAIREEIYKKAKEFDSKIIGFETAIRRPYFHVRPLNVAELENWHNYLDFTEGGDD
FNKVVKLYERCLIACARYPEFWIRYVLCMEASGSMELVENALARATQVFVKRQPEIHLFA
AQFKEQHGDISGARAAYQHVHTGIAPGLLEAIIKHANMENRLGKLEDACSLYEQAIAIEK
GKEHSQALSLLFAQYSRFIFLVSRNVEKARDILVRGVESAPLSKPLLEAMIHLESIQTLP
KQIEYLDSLVEKFIVPSPENPSIASVDDREELSSIFLEFLDLFGDAMSVKKADYRHSKLF
LNRRSTAESKKRHSEEYLASDRTKLAKSLVSTSAPSVMGAYPSTQNQWPAGYGVQPQAWP
QAAQTQAQQWNYAQQAAYGSYGASYAHPQAPVSVPQSTAYGTYPQTYQAQPAFPHAQPAV
AAAPAPAPVQQTAAPSAAYYSGYY
NT seq
2415 nt
NT seq
+upstream
nt +downstream
nt
atgatggaacaaacatcttctgtagctcagagtgatggtagtgctaatgctcctgatgct
gctggttccattctttcaccttctgaaaatgcagctagtcttgctcctaatacaggagaa
atagatccttcggcaagtggagtgaatgcagaccctgggcgtactcatgtggcaccagaa
aatgtttccgagcaagaaatccatactgcagtggcatatgatgctggtgaaaatttaact
ggtcttgcaaacttgtcagcaaattcaactcaagtttctgtttatgatgcttcacttaat
ggcaatgatgttagtacgatcagggatggatcagctggtattatttctgaaaatggggtt
gcttcagctgatgctatggaaactgctgctatgcaccagccttcggatggctctgccctc
agtgcagaagaagaaaggttatggagcatagtaacaactaattctctggactttgatgct
tggactgccttaattgatgaaacagagagaacatcggagggaaatatttcaaagattcga
aaagtttatgatacatttttggtggaatttcctctatgctatggctactggaagaagtat
gctgatcacgaggcacgtatcagcccagtggacaaagttgcagaagtttatgaacgagct
gttcaaggagttacctactctgtggacatgtggttgcattatagtgtcttcgctattggc
acttatggagatcctgacactatcagaaggctatttgaaagagccttagcttatgttgga
acagattatctgtgctttccactctgggataaatacatagagtatgaaatttcacaacaa
gattggtcccatgttgccacaatttatacaagggtgttagagattccaaatcagcagctg
gatcgttattttgaagggttcaaagagttggttgctagtcgtcctctgtctgagttgcga
acagctgaggaagcagcagctgctgctgatgcaacttctcaagataatgttgaagagatt
cctcccaatgttgcagaacaatcatcgaagtttgcaaatgatagcttaaaagatgctgag
gaattggagaagtacattgctattagggaagagatttataagaaagctaaagagtttgat
tctaagatcattggttttgaaacagcgatcaggaggccctatttccatgtgaggcctctc
aatgttgcggagcttgaaaattggcataattatcttgattttacagaaggtggagatgac
ttcaataaggttgttaagctctacgaaaggtgtttaatagcatgtgctagatacccagaa
ttctggatacgttatgtcctgtgcatggaagctagtggtagtatggagcttgtagaaaat
gctcttgctcgtgctactcaagtatttgtcaagaggcagccagagatccatctttttgct
gctcaatttaaagaacagcatggtgacatttcgggagcacgagctgcttatcaacatgtt
cacactgggatagcacctggtcttctagaggcgataataaagcatgcaaacatggaaaac
cgacttgggaagttggaagatgcttgttctttgtatgagcaggcaattgctattgagaag
ggaaaggaacattcacaagctttatctttgttgttcgctcagtactcacgtttcatattc
ttggtttctcgcaacgttgaaaaggcaagagacattcttgttcgaggtgtggagagtgcg
ccgctgtcaaaaccactgctggaggcaatgatacacttagagtcaattcagactcttcca
aagcaaatagaatatctagattcgttggttgagaaatttatagttcctagtcctgagaac
cctagtattgcaagtgttgatgaccgggaggagctgtcgagcattttcttggagttcctg
gatctctttggagatgctatgtctgttaagaaggcagattatcgacattcaaaattgttc
ttgaaccgtagaagcacggcagagtcaaagaaacgtcattctgaggagtatttagcttca
gacagaaccaaacttgcaaaatcacttgtgtcgacttctgcaccctctgtgatgggtgcg
tatcctagtacacaaaatcagtggcctgcaggttatggtgtgcaacctcaagcttggcct
caagccgcacaaactcaggcacagcagtggaattatgcacaacaggctgcgtatggcagt
tatggagcaagttatgcacatccgcaggcaccagtttcagttcctcaaagtacggcatat
ggaacttatcctcagacctaccaagcgcagccggcctttccccatgcacagcctgctgta
gctgcagctccagctccagctccggtccagcaaactgctgccccctccgctgcgtattac
tctggttattactaa
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