Salvia splendens (scarlet sage): 121777280
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Entry
121777280 CDS
T07627
Name
(RefSeq) ATP-dependent RNA helicase-like protein DB10
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121777280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sspl03041
]
121777280
03009 Ribosome biogenesis [BR:
sspl03009
]
121777280
Enzymes [BR:
sspl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121777280
Spliceosome [BR:
sspl03041
]
Complex A
U1 snRNP components
U1 related factors
121777280
Complex B
121777280
Ribosome biogenesis [BR:
sspl03009
]
Eukaryotic type
Pre-60S particles
Helicases
121777280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
WW
ResIII
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
121777280
NCBI-ProteinID:
XP_042030408
LinkDB
All DBs
Position
18:5132592..5137619
Genome browser
AA seq
673 aa
AA seq
DB search
MAAAAPGISYAPEDPGLPKPWKGLVDDKTGYVYYWNPETNITQYEKPVSPGHTSYAPAHK
SLISSVQKSPQGQYNANDNDDRYSKASNGLTKAVVPVAYQATRSRPDYSHSDVEVKASVG
YGPLAPTGAESIVSAEAYRRRHEISVTGDNVPPPFTSFEATGFASEILREVQHAGFSAPT
PIQAQSWPIAVKGLDIVAIAKTGSGKTLGYLIPGFIHLKQRHNNPKLGPTVLVLSPTREL
ATQIQDEAVKFGRSCRISCTCLYGGAPKGPQLKDIDRGVDVVVATPGRLNDILEMRRISL
HQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPKEVRIIAAELLINPVQ
VNIGNVNELVANKAITQYVEVLSPTDKRRRLEQILRSQEPGSKIIIFCSTKKMCDQLAGN
LTRQFGAAAIHGDKSQGERDYVLNQFRNGRSPVLVATDVAARGLDIKDIRVVLNYDFPTG
VEDYVHRIGRTGRAGATGVAYTFFCEQDAKHASELIKLLEGASQHVPSELRDMASRGGGM
GRAKRQWGSGPGGRDGGGRGGGGRFSSSQTGRDGGRGVWGMPSSTDRAGGRDRHVSGFSN
GYETNGTGSFHQRSFHENGVTAPKIRGRSRSRSRSPRKISGWGQRPRSRSRSIERFPSKS
TRPSSYGNKDYRN
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atggcagctgctgcacctggtataagttacgcacctgaggaccccggtctaccaaaacca
tggaagggtctggttgacgacaagactggatatgtttactattggaatccagagaccaat
ataacccagtatgaaaaacctgtttcccctggtcacacaagctatgcaccagctcataaa
tctttgatttcatcggttcagaagtccccccaaggacagtataatgcgaatgataatgac
gacagatattccaaagctagcaatggattgaccaaggctgttgtaccagtagcttatcag
gccaccagaagcagaccagattattcacacagtgatgtagaggtgaaagccagtgttgga
tatggacctcttgctcccaccggcgcagaaagtattgtgtccgctgaagcctatcgccgg
cgtcatgaaatatctgtgacaggagacaatgtccctccaccattcacctcgtttgaagcc
actggatttgcttcagagattcttagggaggtgcagcatgctggtttttctgctcctact
ccaatacaggcacagtcgtggcctattgctgtaaaaggtcttgatattgtagcaatcgcc
aagacaggatccgggaagaccttgggttacctgattcctggatttattcatctgaaacaa
aggcataataacccaaaattaggtccaacagttttggtgttgtcaccaacaagagagttg
gctactcagattcaagatgaagccgtcaagtttggaaggtcgtgtaggatatcttgcacg
tgtttatatggaggtgcacccaagggtccacaattgaaagacatagacagaggtgttgat
gtggtggtggctactcctggtcgattgaatgatattctggagatgagaaggataagcctc
catcaggtctcatatttggttttagatgaggcggacaggatgctggacatgggttttgaa
cctcagataagaaagatagtgaaggaggtccctgctcgtagacaaaccttgatgtacaca
gcaacgtggccaaaggaggtgcgcataattgcggctgagttactgattaaccctgttcag
gttaatattggaaatgttaatgagctcgttgccaacaaggcaataacgcagtatgttgaa
gttttgtcgccaacggacaaacgcaggcggcttgaacagatattgagatctcaggaacct
ggttctaagataataattttctgttctacaaagaaaatgtgtgaccagctggcaggtaat
ctgacccggcaattcggagcagctgctattcatggcgataaatctcagggtgagagggat
tacgtgttgaatcagtttcgaaatggaagatccccagtgcttgtggccactgatgtagct
gcccgtggcctggacattaaggatataagggtggttttaaactacgacttccctacagga
gtagaggactatgttcacagaattggaagaactggccgggccggtgccactggtgtggca
tatactttcttttgtgagcaggatgcaaagcatgcttcagagcttatcaaactcctggaa
ggtgctagtcagcatgtgcccagcgaactccgtgacatggcttcacgtggtggtggaatg
gggagagcaaaacgtcagtggggatcaggccctggagggcgtgatggaggaggtcgtggt
ggtggtggacgtttcagttcttctcaaactggaagggacggcggaagaggtgtttgggga
atgccatcatccacagatagggctggtggtcgtgatagacatgtctctgggttctctaac
ggatacgagacaaatggcactggaagtttccatcagaggagcttccacgagaacggggtg
actgctccaaagattagaggtagaagtcgcagtcgtagcagaagccctagaaagatttca
ggatgggggcaaaggcctcgaagtcgcagtcgtagcatagagaggtttccatccaagagc
acaaggccctcttcttatggaaacaaggattatagaaattga
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