Salvia splendens (scarlet sage): 121777308
Help
Entry
121777308 CDS
T07627
Name
(RefSeq) protein TRANSPORT INHIBITOR RESPONSE 1-like
KO
K14485
transport inhibitor response 1
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
121777308
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sspl04121
]
121777308
Ubiquitin system [BR:
sspl04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
121777308
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Transp_inhibit
F-box_5
LRR_At5g56370
F-box-like
LRR_At1g61320_AtMIF1
Motif
Other DBs
NCBI-GeneID:
121777308
NCBI-ProteinID:
XP_042030449
LinkDB
All DBs
Position
18:2893312..2897915
Genome browser
AA seq
590 aa
AA seq
DB search
MDPEPKKGDDSPSNSGNSHGPVHPQSPFPDEVLEKVLSFVDSHKDRSSISLVRKDWYNAE
RWTRSKLFIGNCYAVSPEIVARRFRRIKSVTLKGKPRFSDFNLVPLDWGANVYPWLVMFA
KVYPFLEELRLKRMTITDDGLELLAKSFPSFKALSLSSCDGFTENGLKAIASHCRNLTEI
NIQDSITEDVGGGWLSCFPENFSSLEILNFSSLNGDVNFDDLERLVSRCKLMRVLKVNES
ITLDELQRLLVHAPRLTELGTGSFLQELTPRQYEDIETAFCNCRNLQVLSGLWEATSVYL
PLLYGACASLTFLNLRVAPLQSGEFAKFLAHCPNLRCLWVIDTVEDKGLEAVGLSCPLLE
ELRVYPADPDDRDHHDGVTELGFLAVSRGCPKLHYVLYFCRRMTNAAVVTIVQNCPNFTH
FRLCIMTLGQPDYLTNEPMDEAFGAVVKTCTKIKRLSVSGLLTDRTFEYIGKYAKDLEML
AVAFAGSSDWGMQCIMEGCPKLRKLEIRDCPFGDAALLSGREKYEMMRSLWMSACSVTMK
GCRLLARESPRLNVEVIREEGGDENQAIKVYAYRSVAGPRKDAPPLVLTL
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
atggatcccgaaccaaagaaaggggatgattcgccatcgaactctggcaactctcatgga
ccagttcatcctcaatcaccattcccggatgaagtgttggagaaagtcctgtcgttcgta
gattcgcataaagacaggagctcaatctcgcttgtgcgcaaagattggtataacgctgag
agatggacaagatcaaagctttttataggaaattgctatgctgtgtcaccagaaatagtg
gctaggaggttccgaagaattaagagtgttacgcttaaagggaagccgagattttcggat
tttaatttggtaccactggattggggtgctaatgtgtacccttggttggttatgtttgcc
aaagtttaccctttcttggaggagctgaggcttaagaggatgaccatcaccgatgatggc
ctggagctcttggcgaagtcattccctagcttcaaggccttgtctttgtcaagttgtgat
ggattcactgaaaatgggctcaaagcaattgccagtcattgcaggaacttgactgagatc
aacatacaggacagtataacagaggatgtcggtggaggttggttgagttgcttcccggaa
aacttttcttcgctggaaatactaaacttctctagtcttaatggtgatgtaaactttgat
gacctggagagacttgttagccggtgcaaactaatgagagttctgaaggtcaacgagagc
attaccttggatgaattgcaacggctgcttgtgcacgctcctagactaacagagctcggc
actggctccttcctgcaagaactcacgcctcgccaatatgaagacattgaaactgctttt
tgtaattgtagaaatctccaggttctttcgggtttgtgggaagcaacttccgtatatctc
cctcttctttatggagcttgtgccagcctgactttcttgaacttgagggttgcgcccctc
caaagtggtgaatttgcaaagtttcttgcccactgccccaatttacgatgcctttgggtg
attgatacagtcgaagacaaggggctcgaggctgttggtttgagctgtcccttgctcgag
gagctacgggtctaccctgctgatccagatgaccgggatcatcatgatggggtgacagaa
ttgggtttcttggcagtgtctcgtggatgccccaaactccactatgttctctacttctgt
aggagaatgactaatgctgctgttgtgaccatagtgcagaactgccccaatttcacccac
ttccgtctatgcattatgaccctgggccaaccagattatctcacgaacgaacccatggat
gaggcctttggcgctgttgtcaaaacctgcacgaaaatcaagaggctttcagtttcaggc
cttctaactgaccggacatttgagtacattggcaagtacgcgaaggatcttgagatgctg
gcggttgcctttgctggcagcagtgattgggggatgcagtgtatcatggaaggctgtcct
aagctgaggaagcttgagatcagagattgcccctttggagatgctgccctgctgtctgga
cgagagaagtatgagatgatgcgatcgttgtggatgtctgcgtgcagtgtgaccatgaaa
ggctgcagactactcgcgagggagtctcctaggctcaacgttgaggtgataagagaggaa
ggaggcgacgaaaaccaagccatcaaagtctacgcctatcgctctgtagcagggccaagg
aaggatgccccgccattagttctcacactttga
DBGET
integrated database retrieval system
