Salvia splendens (scarlet sage): 121778545
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Entry
121778545 CDS
T07627
Name
(RefSeq) RNA polymerase sigma factor sigC-like isoform X1
KO
K03093
RNA polymerase sigma-I factor
Organism
sspl
Salvia splendens (scarlet sage)
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sspl03021
]
121778545
Transcription machinery [BR:
sspl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
121778545
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r3
Sigma70_r4_2
HTH_31
Motif
Other DBs
NCBI-GeneID:
121778545
NCBI-ProteinID:
XP_042031852
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Position
19:complement(20981096..20985035)
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AA seq
557 aa
AA seq
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MGFRLNIKWGGLSVQSPLSTSSSSLPSSYSCRGRDVSYIMARVSAASVLYGETETQNDTS
KAQASLSSHQLLEKYFLETRELKVGLGKGSGDSSVYRLLDNDTQLSSKEDESVSLTTARA
MQTSQYRLLMKNLDVLEYMFADSDVVRLERDILEQLERLGALRLFNSFLSSTIKSSTSFD
LSKAPTENVDESKVNDSVENRTGKVIVQSGKKELRKLRRNRSLEKESAILQELPSNDLHK
AKLAPARRNSRSRNKKLRIAGNEAEMSSGVKMVAELEKLRVILEKDTGKMPRMSSWAEAA
GVEKSELQRQLHYGWLCRDELLRSTRSLVLFIARNYWGLGVAFEDLIQAGWIGVLQGAER
FDQSRGYKFSTYVQYWIRKSMSTLVARHARGVRVPCTLSKAINQVQKARKSLRTSNGKYP
DDCEIAKFTGLTVAKIVSASKCLRVVGSINEKIGESTSTKYMEIIPDTSTMTPEEAVFRQ
HMIKDVHTLLHGLDSREREVIILRFGLGKSQCKSLEEIGRRFSVSKEWIRRIERAALTKL
RNEESLKILDHYVYLSS
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgggttttaggctaaacatcaaatgggggggtctctcagttcagtcgcctctctccaca
agttcttcatctttgccttcttcatattcttgtagaggcagggacgtttcgtatattatg
gcgagagtatctgctgcttctgtcctatatggcgagaccgaaactcaaaacgatacttcc
aaggcacaagcttccttgtcttcccatcagctcttggagaagtatttcctggaaactaga
gaattaaaggtgggacttggaaagggctccggagatagtagtgtgtacaggttacttgat
aacgacactcagctttctagcaaagaggatgagtctgtctcccttaccaccgcacgagca
atgcaaacatcacagtacagattgttgatgaagaatctcgatgtgttggagtacatgttt
gctgattctgacgtggtaaggttggaacgagatattctggagcaattagaaagactcggt
gctctaagattgttcaattcatttctatcaagtaccataaaatcctcgacttcttttgat
ttgtctaaggctccaactgagaatgttgatgagtccaaggtaaatgactcggtggagaat
cgtacaggcaaggtgattgttcaatctgggaaaaaagaactcagaaaattgagaagaaac
agatcgttggagaaggaaagtgctattttgcaagaattgccttcaaatgatcttcataag
gctaaacttgcccctgctagaagaaactcgagatccagaaacaaaaagctcaggattgct
gggaacgaggcagagatgtcaagtggagttaagatggttgcagaattggaaaagctgagg
gtgatactggaaaaggataccggtaaaatgcctaggatgagtagctgggccgaagctgcc
ggagttgagaagagtgagctgcaacgtcagttgcattatggatggctttgtagagacgag
cttttaagaagcacgcgctccttggttttgtttattgcaagaaattactggggacttgga
gtagcatttgaagatctgattcaggcggggtggataggtgtcttgcaaggtgcagagaga
tttgatcaatcaagagggtacaaattctcaacctacgtccagtattggatcaggaagtcg
atgtcaacattggtggcgagacatgccagaggagtccgtgtcccttgcacattgagcaag
gccattaatcaagtacagaaagcacgaaagtcccttcgtacgagcaatggaaagtatcca
gatgactgtgaaatcgccaagtttactggtctcaccgtagctaaaatcgtctcagctagc
aaatgcctcagggttgtgggatcaatcaatgagaaaataggggaatccaccagcactaag
tatatggagatcataccggatacatcgacgatgacccccgaagaagcggttttcagacag
catatgatcaaggatgtgcacacacttctccatgggttggattcaagagagagagaggta
ataatcctaagattcggactaggtaagagtcaatgcaaatctctggaggaaatagggagg
cgtttcagtgtgagcaaagagtggataagaagaatagagagggctgctcttacaaaactg
aggaatgaggaatctctcaaaattttggaccactatgtatatcttagtagttag
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