Salvia splendens (scarlet sage): 121779634
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Entry
121779634 CDS
T07627
Name
(RefSeq) serine/arginine-rich splicing factor RS40-like isoform X1
KO
K12893
serine/arginine-rich splicing factor 4/5/6
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121779634
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sspl03041
]
121779634
Spliceosome [BR:
sspl03041
]
Common components
Common spliceosomal components
SR proteins
121779634
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RRM_1
Nup35_RRM_2
RRM_5
RNA_bind
SET_assoc
DUF2129
Motif
Other DBs
NCBI-GeneID:
121779634
NCBI-ProteinID:
XP_042032918
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All DBs
Position
19:27900774..27904793
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AA seq
389 aa
AA seq
DB search
MRPVFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFVYMEDERDAEDAIRSLDRIEF
GRKGRRLRVEWTKQERSSRRPESSKKTSSNTRPSKTLFVINFDPYHTRTRDLERHFDPYG
KILNIRVRRNFAFIQFESLEDASKALDATNMSKLLDRVITVEFAIKDDDDRRNGNSPDRV
RDRSPRRGYDRARSQSPYRRERGSPDYGHSRGRSPSPYRRERASPDYTRGSSQSPNRKER
GSLNRKVRRSPIRKERDSSDRKERESPDRKVRGSPDRKERGSPNRKEREHRRDHERSPSP
EKEEGETTDHNNEQSLSPQRKRSNGDISSGLNPGKSESPGYDCDPRVSPQGEKTEKASIP
DDFARDRSPAYSDGESPPPDRFGSQSPGA
NT seq
1170 nt
NT seq
+upstream
nt +downstream
nt
atgagaccagttttttgtggaaatttcgagtatgatgctcggcagtctgatctggagaga
ctcttcagaagatatgggaaagtcgacagggttgatatgaagtctggttttgcttttgtc
tacatggaggatgaaagggatgctgaggatgcaattcgttcacttgaccgaattgaattt
ggtaggaagggtcgtcgacttcgtgttgagtggaccaagcaagaacggagtagcaggcgg
ccagaaagctccaaaaaaacttcatctaacacaagaccctcaaagaccctctttgtcata
aactttgatccgtatcatacaagaacaagagatttagaaagacattttgatccttacgga
aaaattttgaatataagggtgaggagaaattttgcgtttattcagtttgaatctctggaa
gatgcatcaaaagctttggatgctactaacatgagcaaattgttggatcgtgttattacg
gttgaatttgctatcaaggatgatgatgataggcgaaacggaaatagccctgaccgagtt
cgtgacagatcacctaggagaggctatgatagggcaagatctcagagtccgtacaggaga
gagaggggcagtcctgattatgggcacagtcgtggccgtagcccaagcccgtatcgcaga
gagcgagcaagtcctgactatactcgtgggagtagccagagccccaacaggaaggaaagg
gggagcctcaataggaaggtaaggaggagccccattaggaaggaaagggatagctcagat
aggaaggaaagggagagtcctgataggaaggtaagggggagccccgataggaaggaaaga
gggagccccaataggaaggaaagggaacatagacgtgatcatgagcggagtccaagtcct
gagaaggaggagggagagactactgatcacaacaatgaacaaagcttaagccctcaaaga
aagaggtccaatggtgatataagcagtggcctgaatccaggaaagagtgaaagtcccggg
tatgattgtgacccccgtgtaagtcctcaaggagagaaaactgagaaggcatctatccct
gatgactttgctcgcgatagatctccagcttacagtgatggagaaagccccccgcccgat
agatttgggagccaatcacccggggcatga
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