Salvia splendens (scarlet sage): 121779636
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Entry
121779636 CDS
T07627
Name
(RefSeq) eukaryotic initiation factor 4A-3-like
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03013
Nucleocytoplasmic transport
sspl03015
mRNA surveillance pathway
sspl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121779636
09122 Translation
03013 Nucleocytoplasmic transport
121779636
03015 mRNA surveillance pathway
121779636
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121779636
03041 Spliceosome [BR:
sspl03041
]
121779636
03009 Ribosome biogenesis [BR:
sspl03009
]
121779636
03012 Translation factors [BR:
sspl03012
]
121779636
Enzymes [BR:
sspl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121779636
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
121779636
mRNA cycle factors
Stress granule specific factors
121779636
Spliceosome [BR:
sspl03041
]
Complex C
Other components
EJC/TREX
121779636
Ribosome biogenesis [BR:
sspl03009
]
Eukaryotic type
90S particles
Helicases
121779636
Translation factors [BR:
sspl03012
]
Eukaryotic type
Initiation factors
eIF-4
121779636
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
AAA_30
AAA_22
Helicase_RecD
Motif
Other DBs
NCBI-GeneID:
121779636
NCBI-ProteinID:
XP_042032925
LinkDB
All DBs
Position
19:complement(22847059..22850567)
Genome browser
AA seq
406 aa
AA seq
DB search
MAGIQRGGGSRRPAMEDDSKLVFETSKGVEPILSFDEMGIKEDLLRGTYNYGFEKPSAIQ
QRALVPIISGRDVIAQAQSGTGKTSMIALSVCQIVDTKSSEVQALILSPTRELASQTEKV
ILAIGDYINVQAHACVGGKSVGEDIRKLEHGVQVVSGTPGRVCDMIKRRTLRTRAIKLLI
LDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPNEILEITSKFMTDPVRILVKRDE
LTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTAKMRENNFTVS
SMHGDMPQKERDAIMGEFRSGQTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRI
GRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atggcggggatccagagaggcggcggctcccggcgcccagcaatggaagacgattccaag
ctcgtgttcgagacttcgaaaggtgttgagccgattttgagcttcgacgagatgggtata
aaggaagatctcctcagaggaacctacaactacggcttcgaaaagccttccgctattcag
cagcgggcgcttgtgccgatcatctccggacgtgacgtcattgctcaggcgcagtccggt
accggcaagacttccatgatcgcgctctctgtttgccagattgtcgataccaagtcttca
gaagttcaagcgttgatactatcacctacgcgagagttagcttcccagacagagaaagtg
atattggcaattggtgactatataaatgtgcaagctcatgcttgtgttggaggcaaaagt
gttggcgaagatattagaaaactagagcatggagttcaagtggtgtcgggcactcctggc
agagtctgtgatatgatcaagaggagaacactacgcactagagcaatcaaattattaatc
ttggatgagtctgatgaaatgctgagcaggggatttaaggatcagatttatgatgtctac
agatatcttccaccagatcttcaggtggtgttaatttctgctacccttccaaatgaaata
ttggagatcacaagcaaattcatgactgacccagttcgtatccttgtaaagcgtgatgaa
ttgactcttgagggcattaaacaattctttgtcgccgtagaaagagaagagtggaaattt
gatactctatgtgatttatatgatacccttacaatcactcaggctgttatcttctgtaac
accaaacggaaggtggattggttaacagcaaaaatgcgtgagaataactttactgtctca
tctatgcacggagatatgccacaaaaggaacgtgatgcaattatgggagagtttaggtct
ggccagactcgggttcttatcacaacagatgtatgggccaggggattggatgtccaacag
gtatctttggtgattaattatgatcttcccaacaaccgtgagctttacattcaccgcatt
gggcggtctgggcgttttggaagaaagggtgttgccataaattttgtcaaaagtgacgat
atcaaaatcctaagagatatcgaacagtactacagtacacagatcgacgagatgccaatg
aatgtggctgatttaatttag
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integrated database retrieval system
