Salvia splendens (scarlet sage): 121779645
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Entry
121779645 CDS
T07627
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121779645
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121779645
03041 Spliceosome [BR:
sspl03041
]
121779645
03009 Ribosome biogenesis [BR:
sspl03009
]
121779645
03016 Transfer RNA biogenesis [BR:
sspl03016
]
121779645
Enzymes [BR:
sspl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121779645
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
121779645
Spliceosome [BR:
sspl03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
121779645
Complex C
U4/U6.U5 tri-SnRNP related factors
121779645
Ribosome biogenesis [BR:
sspl03009
]
Eukaryotic type
Pre-60S particles
Helicases
121779645
Transfer RNA biogenesis [BR:
sspl03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
121779645
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
NPR1_interact
Motif
Other DBs
NCBI-GeneID:
121779645
NCBI-ProteinID:
XP_042032939
LinkDB
All DBs
Position
19:complement(19691955..19701125)
Genome browser
AA seq
995 aa
AA seq
DB search
MGSVKRRTLEEATEGCDTPPLKQRRENVNGDENGLIDEAVTCLHEVSYPEGYQRPASNNQ
QREAKPAKEFPFSLDPFQLEAIKCLDNGESVMVSAHTSAGKTVVGLYAIAMSLRNKQRVI
YTSPIKALSNQKYREFKEEFSDVGLMTGDVTIDPNASCLVMTTEIWRSMQYKGSEITREV
AWIIFDEVHYMRDRERGVVWEESIVMAPKNSRFVFLSATVPNAREFADWVAKVHQQPCHI
VYTDYRPTPLQHYIFPCGGDGLYLVVDEKDKFREDSFQKALNALNPANEDRRKENGKGPK
GLVAGKAGEDSDIFKMIKMIILRQYDPVICFSFSKRECEFLAMQMAKMDLSDEDEKVNIE
TIFWSAMDMLSDDDKKLPQVSNMLPLLKRGIGVHHSGLLPILKEVIEILFQEGFIKCLFA
TETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDDRGICILMVDE
KLEPSTVKFMLKGSADSLNSAFHLSYNMLLNQIRAADADPENLLRNSFYQFQADRAIPDL
EKQAKILEAERDSIIIEEEESVENYYSLLKQYKTLKKEIRDIVFSPKNCLPFLQPGRLVS
IQCTKSAEDSPSFSMQDEVTWGVIINFERVKVASEDDANKKPEDASYSVDILTRCRVHKD
EIAKKTIRIIPLKESGEPAVISIPISQIDSLSSVRLIIPKDLLPLEARENTLKKVSEVLV
RFAKEGVPILDPEDDMKVQSSSYRKATRRTEALENLFEKHEVAKSPLIEQKLKVLHTKKE
LTAKIRSLKKAMKSSSVLAFKDELKARKRTLRRLGYITSDDVVELKGKVACEISSAEELT
LTELMFNGVLKDIRVEEMIALLSCFVWQEKLQEAQKPRDELELLFMQLQETARKVAKVQL
ECKVQIDIENFVSSFRPDIMEAVYAWARGSKFYEIMEMTPVFEGSLIRAIRRLEELLQQL
ILAAKSIGETDLEVKFEDAVTKIKRDIVFAASLYL
NT seq
2988 nt
NT seq
+upstream
nt +downstream
nt
atgggttcagtgaagagacggacgttggaggaggcgacggagggctgcgacactccgccg
ctgaagcaacggagagagaatgtgaatggtgatgagaatggtttgatagatgaagctgta
acttgccttcatgaagtatcgtatccagaggggtaccagcggcccgcttcaaataatcag
cagcgtgaagcaaagcctgccaaggaattccccttttctcttgatccttttcagttggaa
gctattaagtgtcttgacaatggagaatccgtcatggtctctgcacatacatctgctggt
aagacagttgtgggcttgtatgccatagccatgtcgttgcgcaacaagcaacgtgtgata
tatacatctccgattaaagctctcagcaaccagaaatatagagagtttaaagaagagttt
tcggatgttgggttgatgacaggcgatgtcactatcgaccccaatgcgtcttgcttggtt
atgaccactgagatctggcgaagcatgcaatacaaaggatcagaaattactagggaggtg
gcctggattatttttgatgaagtacattacatgagagacagagagagaggtgttgtgtgg
gaagagagtattgttatggccccaaagaactctcgatttgtgtttctctctgccacagtg
cccaatgcaagggagtttgctgattgggttgcaaaggtgcatcaacaaccatgtcatatt
gtttacacagattataggccaacaccccttcagcattacatctttccttgtggaggtgat
ggtctctacttagtggttgatgaaaaggataagtttcgtgaggacagctttcagaaagct
cttaatgctctgaatccggccaatgaagacagaaggaaagagaatgggaaagggccgaaa
ggtttagttgcgggtaaagctggtgaagatagtgatatatttaagatgatcaaaatgatc
attttgcgccagtatgatcctgtcatatgtttcagttttagcaaaagagaatgtgaattt
cttgctatgcagatggcaaaaatggacctaagtgacgaggatgagaaagtaaacattgaa
actattttctggagtgctatggatatgctgtcggatgatgataagaagttgccacaggtt
tcaaatatgctgcccttgttgaaacgaggcataggtgtacatcactctggtttactgccc
atactgaaggaagtcattgagatcttgttccaagaaggatttatcaagtgcttgtttgct
acagagaccttcagcattgggctaaacatgcctgcaaaaactgttgtcttcactaatgtt
cggaaatttgatggagataagtttaggtggatatctagtggggagtatatacaaatgagt
ggccgagctggtcgccgaggaattgatgatcggggtatttgcatccttatggttgatgag
aagctagagccttcaacagtgaaatttatgttgaaaggaagtgcagattctttgaacagt
gcgttccacttaagctacaatatgcttttaaatcaaatacgagctgcagatgcggatcct
gagaatttgcttcgtaattctttctatcagtttcaggcagatcgtgccattcccgatctt
gagaaacaagcaaagatccttgaagccgagagggattctattataatagaagaagaagag
agcgtggaaaactactattcgcttctaaaacaatacaaaacactgaaaaaggaaatccgt
gatatagtcttttctccaaaaaattgtttgccttttctgcaacccggaagacttgtttct
atacaatgcacaaagagcgctgaggactccccgtcattctctatgcaggatgaggtcaca
tggggagtaataataaattttgagagggttaaagtagcctctgaagatgatgcaaacaag
aagcccgaagatgcaagctattcagtggatattctcacgaggtgcagagtgcataaggat
gaaattgctaaaaaaacaattagaatcattcccttaaaggaatctggagagcctgctgtc
atatcaatccctatttctcagattgatagcttaagtagtgtccggctaataataccaaag
gatcttcttccattagaagctcgagaaaatactttgaagaaagtatccgaagttctggta
agatttgcaaaagaaggtgtacctattctagatcctgaagatgacatgaaggttcaaagc
agctcttacaggaaggcgacacggaggacagaagcactggagaatctttttgagaagcat
gaagttgctaaatcccctctgattgagcagaagctcaaagttttgcacacaaagaaggaa
cttacagcaaaaattagatctctgaagaaagcaatgaaatcttcgtcagtgttggcattc
aaagatgaattaaaagccaggaaaagaactcttaggagactcgggtatattacaagtgat
gatgttgttgaactaaaggggaaagttgcttgtgaaatcagcagtgcggaagagttgaca
ttgacagaactcatgttcaatggtgttctgaaggatataagggtggaggagatgatagct
cttctgtcatgttttgtttggcaagaaaaactgcaggaagctcaaaagccgcgggatgag
cttgagttgctatttatgcaactacaggagacagcacgtaaggtggctaaggttcagctt
gagtgcaaggtacagattgatattgagaatttcgtgagctctttcagaccagatatcatg
gaggctgtctatgcttgggctagaggatctaaattctacgaaattatggagatgacacct
gtttttgagggcagcttaatccgagcaatcaggaggctggaagaactccttcagcagctc
atactagctgcaaaatcaattggtgagacagatcttgaagttaaatttgaggatgctgtc
accaagatcaagagagatatcgtctttgctgcctccttgtacttatag
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