Salvia splendens (scarlet sage): 121779788
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Entry
121779788 CDS
T07627
Name
(RefSeq) CCR4-NOT transcription complex subunit 3-like isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121779788
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121779788
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121779788
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
121779788
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
YwqH-like
DUF1192
Motif
Other DBs
NCBI-GeneID:
121779788
NCBI-ProteinID:
XP_042033140
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Position
19:complement(16112047..16121157)
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AA seq
869 aa
AA seq
DB search
MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALMDARKQIEREMERFKICEKETKTKAFSKEGLGQQPK
TDPKEKAKSETRDWLNNVVSELENQIDSFEAEIERLSVKKGKTRPPRLTHLEASITRHKA
HIMKLELILRLLDNDELGPEEVNDVKDFLDDYVERNQEDFDEFSDVDELYSSLPLDKVES
LEDLVTGPPSLVKGVTALSAVITMKTSLAATPVQTSATTTATIQQVASSLDQVDETAFQD
DAVPRTPPSKGSGPSSPVPQTPPAGLATPGITSVVGVSSPVAVPSATKEEDITNFPGRKS
SPALAETGLRPIGRGGLPSQPSSNILPNSGHTISSNGALGTIPVSSEMGKRTILGSDDRP
GSSGMVQALASTLSNRAVMPQASKSSEGLGLSDTGSVNDSTVVGSRVFNSPVVPGMQWRP
GNSFQNQNEPGQFRGRTEIAPDQREKFLQRFQQVQLHGQNNLLGMPSISGGKQYSAQQQN
LLLQQFNAQSSSVTPQLGLGVGVQASGVSSVTSASVQPQPSVIHQPTNHQTFISSTPKDA
ETVPNKVEEIQQQQSFTEDSSADSAVNSGLGKNLIAEDELKSPYAIEATAPVASGSLADP
SQVMREIDLSQGQPLQSASSSGSLGVIGRRSVSDLGAIGDNVSASTPNSGAMHDQSYNLQ
MLEAAYYRLPQPKDSERAKTYTPRHPAATPPSYPQVQAPMVNNPAFWERLGADTYGTDTL
FFSFYYQQNTYQQYLAARELKKQSWRYHRKYNTWFQRHEEPKVATDDFEQGTYVYFDFHI
ASDEQHGWCQRIKTEFTFEYSYLEDDLII
NT seq
2610 nt
NT seq
+upstream
nt +downstream
nt
atgggagcaagccggaagctgcagggcgagatcgatcgagtcctgaaaaaggttcaagaa
ggcgtcgacgtgttcgacagcatttggaacaaggtttatgatacagacaatgcgaatcag
aaggaaaaattcgaggccgacttgaaaaaggagattaagaagttgcagaggtacagagac
cagatcaagacgtggatacaatccagcgagatcaaggataaaaaggttagtgcctcttat
gagcaggctctgatggatgcccggaagcaaattgagcgtgaaatggaacgatttaagata
tgtgaaaaagaaacaaagacaaaagccttctcaaaagaaggccttggccaacaacctaag
acggatccgaaggaaaaagctaaatcggagactagagattggctgaataacgtggtcagt
gagctggaaaatcaaattgatagctttgaagctgaaattgaaagactttcagttaagaaa
gggaagacaaggccaccgagattgacgcatttggaggcatccatcactcggcataaggct
catattatgaagttggaattgattctgaggctcttggataacgatgaattgggtccagag
gaagtcaatgatgtgaaggatttcttggatgactatgttgaaagaaatcaggaagacttt
gatgagtttagtgatgttgatgagctttacagttccttacctctagacaaggtggagtct
cttgaagatctagttacaggtcctcctagtcttgttaagggagtcactgctttgagtgca
gttataactatgaaaacttctctggctgcaacacctgttcaaacttcagcaacaaccact
gctaccattcaacaggttgcttccagcctcgaccaggttgatgaaaccgcttttcaggat
gatgcagttccaagaaccccaccttctaaaggtagtggccccagttctcctgtaccacaa
acaccaccagcaggccttgcaactcctggcatcacaagtgttgtcggtgtttcatctcct
gtggctgtgccaagtgctacaaaagaagaggatattacaaatttccctggtcgtaaatcg
tcaccagcacttgctgaaactggattaaggcctattgggagaggtgggttgcctagtcaa
ccatcttctaacatccttcctaattccggccacacgatttccagcaatggagcccttggt
accattcccgtatcatctgaaatgggaaaaagaactatcttgggatcggatgatcgacct
gggagtagtggcatggtgcaggctcttgcatctactttaagtaatcgagcagttatgcca
caagcttcaaagtcaagtgaggggcttggattatctgataccggaagtgttaatgattct
acagtcgtgggcagcagagttttcaattctcctgttgttcctggtatgcaatggcggcct
ggaaattccttccaaaaccagaacgaaccaggccagtttcgtggaagaactgagattgcg
cctgatcaaagggagaagtttctccaacgttttcagcaggtacagctgcatggccagaat
aatcttctgggtatgccttctatttctggtggaaagcagtactctgcacaacagcaaaac
cttctcttacaacagttcaatgctcaaagctcatctgtcacacctcaacttgggttgggg
gttggagtccaggcttcaggtgttagcagtgtaacatctgcttcggtgcagccccagcca
agtgtaatccaccaaccaactaatcatcagacattcatatcttcaacgcctaaggatgca
gaaactgtccctaacaaagttgaggaaattcagcagcagcagtccttcacagaagattct
tctgcagattctgctgtcaactctgggctaggaaaaaatcttattgcagaggatgaattg
aaatctccttacgccatagaggctacagctccagttgcttctggttctcttgctgaccct
tctcaagtgatgcgggagatagatctatctcaagggcagcctttacaatcagcatcatct
tctggaagtcttggtgttattggtcgaagaagtgtgtctgatcttggtgctattggggat
aacgttagtgcatctactccaaattctggggcaatgcatgatcagtcgtataatttgcag
atgctggaggctgcttattacagacttcctcaacccaaggattcagaacgtgctaagacc
tatactccaagacatccagctgcaactcctccgagctatcctcaagtacaagcccctatg
gttaataatcccgccttttgggaacgtcttggtgcagatacatatggcactgacaccctc
ttcttttcattttattatcagcagaatacctatcagcaatacttggctgctagggaactg
aaaaaacaatcatggagataccacagaaaatacaacacatggttccagcgacacgaggag
ccaaaagttgctacagatgattttgaacaggggacatatgtatactttgatttccatatt
gccagtgatgaacaacatggatggtgtcagagaataaaaacggagttcactttcgagtac
agttatctagaggacgatttaatcatatag
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