Salvia splendens (scarlet sage): 121779931
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Entry
121779931 CDS
T07627
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03013
Nucleocytoplasmic transport
sspl03015
mRNA surveillance pathway
sspl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121779931
09122 Translation
03013 Nucleocytoplasmic transport
121779931
03015 mRNA surveillance pathway
121779931
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121779931
03041 Spliceosome [BR:
sspl03041
]
121779931
Enzymes [BR:
sspl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121779931
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
121779931
Spliceosome [BR:
sspl03041
]
Complex C
Other components
EJC/TREX
121779931
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
121779931
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Utp25_C
YihI
Motif
Other DBs
NCBI-GeneID:
121779931
NCBI-ProteinID:
XP_042033341
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All DBs
Position
19:19916570..19921021
Genome browser
AA seq
428 aa
AA seq
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MGETKEIEAYEEELLDYEEEEEKAPDSVGAKVNGESVKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPIAGQVSALV
LCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNVKIHKDLLKNECPHIVVGTPGRILA
LSRDKELSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPI
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVT
RAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggcgagacgaaggagatcgaagcctacgaggaggagcttctcgactacgaggaagag
gaggagaaagcacctgattccgtcggtgccaaggtcaacggcgagtccgttaagaaggga
tatgtggggattcacagttcaggattcagggacttcctcttgaagccagagcttttacgt
gctattgttgactcaggatttgagcacccgtcagaagttcaacatgagtgtattcctcaa
gctattcttggaatggatgttatctgccaagccaaatctggtatggggaaaactgctgta
tttgtgctttcaacactacagcagattgaaccaattgcaggccaagtttctgctcttgtc
ctgtgtcatacgagggaattagcttaccagatttgtcatgagtttgaaagattcagcaca
tatttaccagatatcaaggtagctgttttctatggcggtgtcaatgtgaaaatacacaag
gatcttctgaaaaatgaatgtcctcacattgttgttggaactcctggaagaatacttgct
ctgtctagggacaaggaactttctctgaaaaacgtgaggcatttcatactggatgagtgc
gacaagatgctcgagtctcttgatatgcggagggatgtgcaggagatcttcaagatgacc
cctcatgacaagcaagttatgatgttttcagccactctcagcaaggagattcgacccatt
tgcaagaaattcatgcaagatccaatggaaatatatgtagatgatgaagccaagttgacc
cttcatggtcttgtacagcactacatcaaattgagtgagctggagaaaaatcggaagttg
aatgatctgctggatgccttagatttcaatcaagtggtcatatttgtcaaaagtgtcacc
cgtgctgcagagctgaataaattgcttgtggagtgtaacttcccatctatatgcattcac
tctggcatgtcccaggaagaaagattaactcggtacaagagtttcaaagaaggccataag
aggattttggtagctacagatttagttggtagaggaatcgacatagaacgagttaacatt
gtgatcaactacgatatgccggattctgcagacacttatctacacagggttggtagagct
ggaaggtttggcaccaaagggcttgctataacatttgtttcatctgcatctgattcggat
gttctcaatcaagttcaggagaggtttgaagttgatatcaaggagcttcctgagcaaatc
gatacatcgacatatatgccgtcctaa
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