Salvia splendens (scarlet sage): 121780389
Help
Entry
121780389 CDS
T07627
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A-like
KO
K07466
replication factor A1
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03030
DNA replication
sspl03420
Nucleotide excision repair
sspl03430
Mismatch repair
sspl03440
Homologous recombination
sspl03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
121780389
03420 Nucleotide excision repair
121780389
03430 Mismatch repair
121780389
03440 Homologous recombination
121780389
03460 Fanconi anemia pathway
121780389
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sspl03000
]
121780389
03032 DNA replication proteins [BR:
sspl03032
]
121780389
03400 DNA repair and recombination proteins [BR:
sspl03400
]
121780389
Transcription factors [BR:
sspl03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
121780389
DNA replication proteins [BR:
sspl03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
121780389
DNA repair and recombination proteins [BR:
sspl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
121780389
MMR (mismatch excision repair)
121780389
DSBR (double strand breaks repair)
HR (homologous recombination)
121780389
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
Rep-A_N
REPA_OB_2
tRNA_anti-codon
zf-CCHC
zf-CCHC_3
zf-CCHC_2
CDC24_OB3
DUF223
Motif
Other DBs
NCBI-GeneID:
121780389
NCBI-ProteinID:
XP_042033916
LinkDB
All DBs
Position
19:23205933..23209625
Genome browser
AA seq
905 aa
AA seq
DB search
MDSVKLTQGAIAFMTSDAADADKSNFKPVLQVVSVRLVNTQNQTAERYRVLLSDGDFTQQ
GMLATQRNELVKSNYLQNGSVVRLTQFVCNVVQNRKIIIIIDLDVIVGKCDQIGQPNQYP
VKGDGPVPAPGPAVTRPFAPSQLMNQPAYPAESSFSVSSPMPPVGAGPAGARFQQSGEEY
NAGTHSYGSSFPSNMNPGRYNPPNASQVFPRPEPGSAYPKPDVGPGIPRAQFNNYARPPS
SLHQQPSPIYSNRGPIAKNEAPSRIIPIAALNPYQGRWTIKARVTAKSELRLYSNPRGDG
KVFSFDLLDSDGGEIRVTCFNAVADQFYQQIEPGRVYMISKGTLKPAQKAFNHLRNDHEI
MLDSTSTVQPCHEDDRAIPQQQFHFRPISDIEGLDNNSILDLIAIVSSINPPSSIMRKNG
TETQKRTLQLKDMSGRSVELTLWGNFCNAEGQKLQSMCDSGLYPVLAVKSGRVNDFNGKS
VGTISSTQLFIEPGFPEVEKLKTWFDSNGKNTPAISLSKESGPARTDVRKTISQIKDEKL
GTSEKPDWITVSASIVFIKVDNFCYTACPVMIGDRQCNKKVTNNGDGKWRCERCDQSVDE
CDYRYILQMQIQDHTGLTYVTAFQETGEEIMGRSAKELYYMKYNEQDDDKFSELVHDVLF
TKFIFKLKVKEEIFSDEQRVKSTVVRADKVNYPTETKYLLDLVSKLKDDDLGSLPPKSES
MSAVSGLTSGGFGGSRQPETVAAMNYSGVANNVAREGGASMSQYGNQYGGSRYPSTGSTG
MYTSCGSCGGSGHSSGNCPSLMTGAGQSYGTGPTGFSNRATPGAVSGGGASGDCFKCHQP
GHWAKDCPNVGNVPPAYGGNNANPDCFKCHQPGHWAKDCPSVSVPPAYGSNNANPGRYGM
ASKQY
NT seq
2718 nt
NT seq
+upstream
nt +downstream
nt
atggattcggtcaaattgacgcaaggcgcaatagctttcatgaccagcgacgccgccgac
gccgacaagtccaacttcaagccggtgttgcaggtcgtcagtgtgcgcctcgtcaatact
cagaatcagaccgccgagcgctaccgcgtcctgctatccgatggtgatttcactcagcaa
ggaatgctggccacccagcgcaatgaattggtgaaatcgaattatctgcagaatggctct
gttgttaggttgacgcagttcgtctgcaacgttgtccagaatcgcaagattatcatcatc
attgatctagatgtgatagttggaaaatgtgatcagattggtcaaccaaatcagtatcca
gtgaagggtgatggccctgtccctgcccctggccctgctgtaaccagaccatttgcacca
agtcagctgatgaatcagccagcttaccctgccgagtcatcatttagcgtttcttctcca
atgccacctgtgggtgctggtcctgctggagcccgatttcaacagtcaggggaagagtac
aacgctggcacacattcttatggtagttcttttcctagcaatatgaatccgggtagatat
aaccctccgaatgcgtcgcaagtatttcccagacctgaacctggttcagcctatcccaaa
cctgatgttggtccaggcattccacgagctcagtttaacaattatgcccgcccgcctagt
tcattgcatcagcagccgtctccaatctattcaaatagaggtccaattgccaaaaatgaa
gctccttcaagaataataccaattgcagcattgaatccgtatcaaggcaggtggacaatt
aaggccagagtgacagcaaagagtgaactcaggctgtacagcaatcctcgaggtgatgga
aaagtgttctcgttcgatctgcttgattctgatggtggagaaataagggttacttgcttc
aatgctgttgcggatcaattttaccaacaaattgagcctggtagggtttatatgatctcc
aaaggaacgctgaaacctgcacagaaagcatttaaccacctacgcaatgatcatgagata
atgctggatagtacatcaactgtgcaaccttgtcatgaagatgatagggccatcccacag
cagcaatttcatttccgccccataagtgatattgaaggtctggacaacaacagtattttg
gatttgattgctattgtttcttcaatcaatccacccagctctataatgagaaaaaatggt
actgaaactcaaaaaagaactctccaattgaaggatatgtctgggagaagtgttgagttg
actttgtggggaaacttctgcaacgctgaaggacaaaagctacaatccatgtgcgattct
ggtctttatcctgttttggcagtgaaatctggcagggttaatgacttcaatgggaaatct
gtgggcaccatatccagtactcagttgtttatagagcctggttttcccgaggttgagaaa
cttaaaacttggtttgacagcaatggtaagaacacacctgctatatctctttcaaaggaa
tcaggcccagcccgtacggatgtacgcaaaaccatatctcagatcaaagatgaaaagtta
gggacctctgagaagccagattggataacagtatctgcctcaatagtattcataaaagtt
gataacttttgttatactgcatgtccagtcatgattggagatcgacagtgcaacaaaaag
gttactaacaatggagatgggaaatggcgttgtgagagatgtgaccagtcagttgatgag
tgtgattataggtatatcctccagatgcaaatccaggatcacactggcttaacatatgtg
actgcatttcaggagaccggagaagagataatgggtagatctgccaaagagctgtactac
atgaaatataacgaacaagatgatgataaattctctgagctggtgcatgatgtccttttt
acaaaatttatctttaaattgaaagtgaaggaagagattttcagtgatgaacagcgggta
aagtcaacagtagtcagagcagataaggttaactacccaacagagaccaagtatctgctt
gatttggtgtctaagttaaaagatgatgacttaggttcactacctcctaaaagtgagagt
atgtcagcagtatccgggctgactagtggtggatttggtggaagcagacaacctgaaact
gttgcagctatgaattacagcggagttgctaacaatgtggctagagagggtggtgcaagt
atgagtcaatatggtaaccagtatggtggctcgagatatccttcaaccggttcgactgga
atgtatacaagttgtggtagctgtggtggctccgggcatagctctggaaattgcccaagc
ctcatgactggtgctggacaatcatatggaactgggccaactggctttagcaatagggcg
acgcctggggctgttagtggaggtggtgcatctggagactgctttaaatgccatcaacct
gggcactgggccaaggactgccctaatgttggcaacgttcctcctgcttatgggggcaat
aatgccaatcccgactgctttaaatgccatcaacctgggcactgggcaaaggactgcccc
agtgttagtgttcctcctgcttatgggagcaataatgctaatcccgggagatacggaatg
gcatcgaagcagtactga
DBGET
integrated database retrieval system
