Salvia splendens (scarlet sage): 121780547
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Entry
121780547 CDS
T07627
Name
(RefSeq) replication factor C subunit 2-like
KO
K10755
replication factor C subunit 2/4
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03030
DNA replication
sspl03410
Base excision repair
sspl03420
Nucleotide excision repair
sspl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
121780547
03410 Base excision repair
121780547
03420 Nucleotide excision repair
121780547
03430 Mismatch repair
121780547
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sspl03032
]
121780547
03036 Chromosome and associated proteins [BR:
sspl03036
]
121780547
03400 DNA repair and recombination proteins [BR:
sspl03400
]
121780547
DNA replication proteins [BR:
sspl03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
121780547
DNA Replication Termination Factors
ELG1-RFC complex
121780547
Chromosome and associated proteins [BR:
sspl03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
121780547
DNA repair and recombination proteins [BR:
sspl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
121780547
Check point factors
HRAD17(Rad24)-RFC complex
121780547
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
RCF1-5-like_lid
AAA_22
Rad17
RuvB_N
AAA_16
AAA_5
AAA_11
AAA_assoc_2
Mg_chelatase
AAA_14
ResIII
AAA_2
AAA_24
nSTAND3
SLFN-g3_helicase
PhoH
AAA_19
AAA_28
AAA_30
DNAX_ATPase_lid
AAA_7
DUF3853
DUF815
RNA_helicase
NPHP3_N
Parvo_NS1
IstB_IS21
AAA_25
AAA_18
ATPase_2
TIP49
bpMoxR
Cdc6_lid
NB-ARC
Motif
Other DBs
NCBI-GeneID:
121780547
NCBI-ProteinID:
XP_042034069
LinkDB
All DBs
Position
20:4071244..4074992
Genome browser
AA seq
341 aa
AA seq
DB search
MAPVLPSSQQWVEKYRPKQVKDVAHQEEVVRVLTNTLETTNCPHMLFYGPPGTGKTTTAL
AIAHQLYGPELYKSRVLELNASDDRGINVVRTKIKNFAAVAVGSARQGGYPCPPYKIIIL
DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLTEEIMTS
RILYICNEEALKLDSEALSTLSSISQGDMRRAITYLQSAARLFGSSISSKDLISVSGVIP
DGVVQALFTACKSGDFDIADKEVKNVIAEGYPASQMLNHLYDVVVESDDIPDDQKARICK
KFGEADKCLVDGADEYLQLLDVASNIMRALNNMPQEFPFGS
NT seq
1026 nt
NT seq
+upstream
nt +downstream
nt
atggcgccagttttaccgagttctcagcaatgggtcgagaaatatcgaccgaagcaagtg
aaggatgttgcgcaccaggaagaggtcgttcgagttctcaccaacactttggaaaccact
aattgtccgcacatgctattctatgggcctcctggtactgggaaaacgactacagctctc
gccattgctcatcagctctacgggcctgagttatacaagtctagagtactggagctgaat
gctagtgatgatcgtgggataaacgttgttcgtacgaaaattaagaattttgctgctgtt
gctgttggctctgcacgtcaaggtggttatccttgcccaccttacaagattataattctt
gatgaggcagattcgatgactgaagatgcccagaatgccttgcgacgcactatggagaca
tactcaaaagttacaagattcttcttcatttgtaactacatcagcagaattatcgaaccc
cttgcatctaggtgtgcgaagtttagattcaaaccacttacagaagaaattatgacatct
cgcattctttatatctgcaatgaggaagctcttaagttggattcagaggcactttcaacc
ttaagttctatctctcaaggtgatatgcgtcgtgctataacttatctacaaagtgctgct
cgcttattcggatcctcaatatcatctaaggacttaatcagcgtgtctggtgtcatcccc
gatggtgtagtgcaggctctctttacagcttgcaaaagtggtgattttgacatagctgat
aaagaagtaaaaaatgtgattgctgaaggttatccagcttctcagatgcttaatcatttg
tatgatgtagttgtcgaatcagatgacataccagatgaccagaaagcaagaatatgcaag
aaatttggagaggcagataagtgtcttgtagacggagcagacgagtatctgcaactgttg
gatgtggctagcaatatcatgcgtgcgctaaataacatgccacaggaattccccttcgga
agttag
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