Salvia splendens (scarlet sage): 121781833
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Entry
121781833 CDS
T07627
Name
(RefSeq) RNA polymerase sigma factor sigC-like isoform X1
KO
K03093
RNA polymerase sigma-I factor
Organism
sspl
Salvia splendens (scarlet sage)
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sspl03021
]
121781833
Transcription machinery [BR:
sspl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
121781833
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r3
Sigma70_r4_2
HTH_31
Motif
Other DBs
NCBI-GeneID:
121781833
NCBI-ProteinID:
XP_042035468
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Position
20:complement(20340613..20344810)
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AA seq
557 aa
AA seq
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MGFRLNIKWGGLSVQSPLSTSSSSLPSSYSFRGRDNSYIMARVSAASVLYGEAETQNDTS
KAQASLSSHQLLEKYFLETRELKVGLGKGSGDSSVYRLLDNDTQISRKEDESVSLTTARA
MQTSQYRLLMKNLDVLEYMFADSDVVRLERDILEQLERLGALRLFSSFLSRTIKSSTSFD
LSKAPTENVDESKVNDSVENRTGKVIVQSGKKELRKLRRNRSLEKESAILQELPSNDLHK
AKFAPARRNSRSKNKKLKIARNEAEMSGGVKMVAELEKLRVILEKDTGKIPSMSSWAEAA
GVEKSELQRQLHYGWLCRDELLRSTRSLVLFIARNYWGLGVAFEDLIQAGRIGVLQGAER
FDQSRGYKFSTYVQYWIRKSMSTLVARHARGVRIPCTLSKAINQVQKARKSLRTSNGKYP
DDCEIAKFTGLTVAKIVSASKCLRVVGSINEKIGESTSTKYMEIIPDTSTMTPEEAVFRQ
HMIKDVHTLLHGLDSREREVIILRFGLGKSQCKSLEEIGRRFSVSKEWIRRIERAALTKL
RNEESLKILDYYVYLSS
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgggttttaggctaaacatcaaatggggcggtctctcagttcagtcgcctctctccaca
agttcttcatccttgccttcttcatattcttttagaggcagggataattcatatattatg
gcgagagtgtctgcagcttctgtcctatatggcgaggccgaaactcaaaacgatacttcc
aaggcacaagcttccttgtcttcccatcagctcttggagaagtatttcttggaaactaga
gaattaaaggtgggacttggaaagggctccggagatagtagtgtatacaggttacttgat
aacgacactcagatttctaggaaagaggatgagtctgtctcccttaccaccgcacgagca
atgcaaacatcacagtacagattgttgatgaagaatctcgatgtgttggagtacatgttt
gctgattctgacgtggtaaggttggaacgagatattctggagcaattagaaagactcggt
gctctaagattattcagttcgtttctatcaaggaccataaaatcctcaacctcttttgat
ttgtctaaggctccaactgagaatgttgacgagtccaaggtaaatgactctgtggagaat
cgtacagggaaggtgattgttcaatctgggaaaaaagaactcagaaaattgagaagaaac
agatcgttggagaaggaaagtgctattttgcaagaattgccttcaaatgatctccataaa
gctaaatttgcccctgctagaagaaactcgagatccaaaaacaaaaagctcaagattgct
aggaacgaggcagagatgtcaggtggagttaagatggttgcagaattggaaaagctgagg
gtgatactggaaaaggataccggtaaaatccctagcatgagtagctgggccgaagctgcc
ggagttgagaagagcgagctgcaacgtcagttgcattatggatggctttgtagagacgag
cttttaagaagcacgcgctccttggttttgtttattgcaagaaattactggggacttgga
gtagcatttgaagatctgattcaggcagggagaataggtgtcttgcaaggtgcagagaga
tttgatcaatcaagaggctacaaattctcgacctacgtccagtattggatcaggaaatcg
atgtcaacattagtggcgagacatgctagaggagtccgtatcccttgcactttgagcaag
gccataaatcaagtacagaaagcaaggaagtcccttcgtacgagcaatggaaagtatcca
gatgactgtgaaatcgccaagttcactggtctcaccgtagctaaaatcgtctcagctagc
aaatgccttagggttgtgggatcaatcaatgaaaaaataggggaatccaccagcactaag
tatatggagatcataccagatacatcgacaatgacccccgaagaagcggttttcagacag
catatgatcaaggatgtgcacacacttctccatgggttggattcaagagaaagagaggta
ataatcctaagattcggactaggtaagagtcaatgcaaatctctggaggaaatagggagg
cgtttcagtgtgagcaaagagtggataagaagaatagagagggctgctcttacaaagctg
aggaatgaggaatctctcaaaattttggactactatgtatatcttagtagttag
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