Salvia splendens (scarlet sage): 121782035
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Entry
121782035 CDS
T07627
Name
(RefSeq) LOW QUALITY PROTEIN: mediator of RNA polymerase II transcription subunit 23-like
KO
K15166
mediator of RNA polymerase II transcription subunit 23
Organism
sspl
Salvia splendens (scarlet sage)
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sspl03021
]
121782035
Transcription machinery [BR:
sspl03021
]
Eukaryotic type
RNA polymerase II system
Mediator complex
Other mediators
121782035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Med23
Motif
Other DBs
NCBI-GeneID:
121782035
NCBI-ProteinID:
XP_042035670
LinkDB
All DBs
Position
20:complement(24686140..24697621)
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AA seq
1611 aa
AA seq
DB search
MMQRGTTXGLSSQPLAEMEQLNNTQQQQQQHRPSSSASSRARHFHPARPAILELFNLYLG
RRSQQKSDESVREPPNKTQKRVTAINRELPPPNEQFLFDFEQIQSQFPDQEQLRAVTESV
LISLVIQCCNHAPRAEFLLFALRSLCNIGYINWDAFLPSLLSSVSSAETPVGQGSQAMAV
VASATSSQSGVPPPSNAIPNNANFQASNPASPLPSIHGIGSPAQSGAEPSTLSPMKSNDV
ICNGQQSARPIYLVGKMLYAVYVNLESNLMPVTRFDIFNHMLNWLVNWDQRQQGLDEFDS
AQFWKPDKALIEWLHDCLDVIWLLVDDNKCRVPFYELIRSGLQFIENIPDDEALFTLILE
IHRRRDMIATHMQMLDQHLYCPTFGTPRLLPQATTTGETATNMRYSPITYPSVLGEPLHG
EELAASIQRGSLDWERAMRCLRHAFRNTPSPDWWRRVLLVAPCHRTHAQGPTPGAVFTSE
MISEATIDRIVELLKLTNAETNCWQEWLIVSDVFFFLMKHGCIDFVDFVDKLVCRLQDGD
QHILRTNHVTWLLAHIIRVELVMNALNTDSRKVETTRKILSFHKEDQSADPNNPQSILLD
FISSCQNLRIWSLNTSTREYLNNEQLQKGKQIDEWWRQVSKGERIMDYMNMDERSIGMFW
VVSYTMAQPACETVMHWLTSAGVTEIPGANLQPNERLMVMQEVSPLPVSLLSGFSINLCL
KLAYQMEESLFSGQVVPSIAMVETYVRVLLISPHALFRSLMTLLSPKNQNTLSKPAASLL
VFEILNYRLLSLYRYQKKNKGLIHDVTKIIATLKGKRGDHRIFRLAENLCMNLILSMREF
FSVKRDGKGPTEFTETINRITITTLAIIIKTHGIAEVEHLLYLQTILEQILATSQHAWSE
KTLRHFPAILREALAGRIDNRGLAIQAWQQAETTVINQCTQLLSSSADPTYVMTYINHSF
PQHRQYLCSGAWILMYGHPESINSLHLGRVLREFSPEEVTANIYTMVDVLLHHFNLELQC
GRSLQELMMKACANLAFFIWTHELLPLDILLLALIDRDDDPHALRIVISILDSKELQQRV
KLYLINRGPAEHWLYSGVFKRTELQKALGNHLSWKERYPTFFDDIAARLLPVVPLIIYRF
IENDAFDAADRVLHVYASFLHYYPLNFTFVRDILAYFYGHLPSKLIIRILTVLDVKKILF
SEAFPQHINSSNAPPLDYFATLLLGLVNHVIPPLNNSSKNGQVGEASNASVRAPHNKAQA
TSQGGPSVAPEGQKPFYQLQDLGTYTQLILETAVIEILSLPITASQIVSSLVQIVVHIQP
TLVQSSNGLHPTSVGQSSVLPTSPSGGSTDSLGTTRTPTAAGLSNSNFVWRSGYTCQQLS
CLLIQACGLLLAQLPPEFHIQLYIEAARVIKESWWLSDGKRSVSELESAVCYALLDPTWA
AQDNTSTAIGNVVALLHAFFSNLPLEWLEGTHLIIKQLRPVTSIAGLRIAFRIIGPLLPR
LANAHTLFNKTLSVLLSVMADVFGRNSQPSAPVEASEIADIIDFLHHIVHYEGQGGPVQA
SSKPRAEVLALIGRAAESFSPDVQHLMTHLKADVNCSIYAATHPKFVPNAN
NT seq
4836 nt
NT seq
+upstream
nt +downstream
nt
atgatgcagcggggtacaactnctggcctctcgtcccagcccttggcggagatggaacag
ctcaacaacacgcaacagcagcagcagcagcatcgaccttcttcttccgcctcttcccgt
gcccgccatttccaccccgcccgacccgccattctagaactcttcaatctctacttgggc
aggagatcacagcagaaatcagatgaatctgttagggaacccccgaacaagacacagaag
cgggttactgctattaacagagagcttcctccccctaatgagcagttcctctttgacttt
gagcagatacagagccaatttcctgaccaggagcaactacgcgctgtaacggaatctgtc
ctaatatctcttgttattcaatgctgtaatcatgctcctagagcagagtttctgctcttt
gctttgcgtagtttgtgcaatataggatacataaactgggatgctttcttgccgtctctt
ctttcttcagtttcttctgcggagaccccggttggtcagggcagtcaagctatggctgtt
gttgcttctgcaacttcatcacagtcaggagtcccaccaccttcaaatgccattcctaat
aacgctaattttcaggcatctaatcctgcgtctcctttgccttcaattcatggcattggg
tctcctgcacaatcaggtgctgagccatccacgttatctccgatgaagtcaaatgatgtc
atctgtaatggtcaacagtcagcgaggccaatatatctggtagggaaaatgttatacgca
gtttacgtcaaccttgagtctaatctaatgcctgtcacacggtttgatatctttaaccac
atgttgaattggcttgtcaattgggatcaaagacagcaagggcttgatgaatttgatagt
gcacagttttggaagcctgataaagccctaattgagtggttacatgattgtctagatgtt
atttggctgttagttgatgataataaatgtcgtgtgcccttttacgagctcatacgcagt
ggtttgcaatttattgagaacataccagatgatgaggcactgtttacccttatcttagaa
attcatagaaggagagatatgatagcaacccacatgcaaatgttagatcaacatctatat
tgccctacatttggaactcctcgactcttacctcaggcaactaccactggtgagacagcg
acaaacatgagatattcaccaatcacatatccaagtgtacttggagaacctttgcatgga
gaggaacttgcagcatccattcagagaggaagtcttgactgggagcgagctatgcgatgt
ctgagacatgcctttcgcaacactccatctccagactggtggagacgtgtattgcttgta
gcaccctgccacaggactcatgcccaaggacctacaccaggtgctgtttttacttcggaa
atgattagtgaggcaacaattgataggattgtggaattgctgaagttgacaaatgcagaa
acaaattgctggcaggagtggcttattgtttctgatgtattctttttcctcatgaagcat
ggatgcattgattttgttgattttgttgacaaactagtgtgtcgacttcaagacggtgat
caacatatcctcaggaccaatcacgttacatggttgcttgcacatattatccgtgttgag
cttgtaatgaatgctctaaatacagactcaagaaaggtggagacaacccggaaaattctt
tcattccataaagaagaccaaagtgctgaccctaataacccacaaagtatcttgctggac
ttcattagcagttgtcagaatttgcgtatttggtcattaaatacatcaactagggaatat
ttgaacaacgagcagcttcaaaagggaaaacaaatcgatgaatggtggaggcaagttagt
aaaggtgaaaggatcatggactatatgaatatggatgaaaggtcaattggtatgttttgg
gttgtctcatacactatggcacagcccgcttgtgaaacagtcatgcactggttaacctca
gctggagtaacagagataccgggagcaaatctacagccaaatgaaaggttgatggtgatg
caggaagtcagcccattgccagtatcactgttatctgggttttcaataaatttatgtctg
aaacttgcatatcagatggaagagtctttgttttctggacaggttgtacctagcattgca
atggtagaaacatatgttcgagtattgctcatttcacctcatgcactatttcgctcactc
atgacgctactgtctccgaagaatcaaaacacactgagcaaacctgctgcttctcttctg
gtgtttgaaattctgaactatcggttactttcactctacaggtaccaaaagaaaaacaag
ggtttaattcatgatgtcacaaaaattattgctacactgaagggaaaacgtggtgaccat
cgtatttttcgtctggctgagaatttatgcatgaatcttatattatcaatgagggaattt
ttctctgtgaagagggatggaaagggtccaaccgagtttacggaaactataaatcggata
acaataactacccttgccatcattattaaaactcatgggattgcggaggttgaacacctg
ctataccttcaaacaattctggaacagatacttgccaccagccaacatgcatggtcagag
aagaccctccgccacttccctgctattttgcgagaggccttagctggccggatagataat
aggggcttggccattcaagcatggcaacaggcagaaacaactgtgatcaatcaatgcaca
cagcttctatcttcatctgctgatcctacgtatgtcatgacttacattaatcacagtttt
cctcaacaccgtcaatatctttgctctggtgcatggatactgatgtatggccaccctgag
agcattaacagtttacatcttggtcgcgtcctgagagaattttcccctgaagaagttact
gccaatatctatacaatggtggatgtcctattgcatcatttcaatctagaacttcagtgt
ggacggtctttgcaggagcttatgatgaaagcttgtgccaaccttgccttcttcatttgg
actcatgagctattgccattagacattttactgctagcacttattgatagagatgacgat
ccccatgctctgcgaattgtgataagcatacttgacagcaaagaacttcaacaaagggtg
aaactgtatcttataaatcgtggtccagctgagcattggctttactctggagtttttaag
cgtactgaattgcaaaaggcccttggaaatcatctgtcatggaaggaaaggtacccgaca
ttttttgatgatatagctgcaagattgctcccggtggttcccctaatcatttataggttt
atcgagaatgatgcttttgatgctgctgacagagttctgcatgtttatgcatcattcctt
cattactatcctttgaatttcacatttgtgcgtgatatacttgcctatttctatggtcat
cttccaagcaaacttatcattcggatattgactgtattagatgtgaaaaagatactattt
tctgaagccttccctcagcatatcaactcgtctaatgctcctccactagactattttgct
acacttctattgggcctggtgaatcacgtaattcctcccctgaataactcctctaagaac
gggcaggttggagaagcctcaaatgcttctgtgcgagcgccgcataacaaggctcaagca
acatcacagggtggtccatccgttgctcctgaaggccagaaaccattctatcagctccag
gatcttggcacatatacgcagttgattctcgaaacggctgttatagaaatcctctctctt
cctatcactgcatcccagattgtatcctcacttgttcaaatcgttgttcacatacaacca
actctggtccaatccagcaatgggttacacccaactagcgtcggccaaagttctgtgttg
cctacttctccatcagggggaagcactgattccttgggcacgactaggactcccacagca
gcaggattaagtaactctaactttgtttggcgaagtggttatacatgtcaacagttgtct
tgcttgttgatccaagcttgtggtctgcttttggctcagctaccccctgagtttcatatt
caactctatatagaggcggcacgtgtaataaaggagagctggtggctttccgatgggaaa
agatcagtctctgaattagaatctgccgtttgctatgctttattagatccaacatgggct
gcccaggacaacacctctacagccattggtaatgtggtggcactgctgcatgctttcttc
agtaaccttcctctagagtggctggaggggacacatctcattatcaagcaactcagacct
gtaacatcaatagctggattgagaatagctttccgtattataggccctttgctccctcga
ttggccaatgctcacaccctcttcaataagacgctatcggtgctgttaagtgtaatggcg
gatgtctttggaaggaattcacagccttcagctcctgtcgaagcatcggaaattgctgat
attatagacttcctgcaccatatagttcattacgaagggcaaggagggcccgtgcaagca
agcagcaagccgagagcggaagtgctggctctcatcggaagagcagctgaaagtttcagc
ccagatgtacagcatcttatgactcacttaaaggctgatgtgaactgttcgatatacgca
gctacacatccaaagtttgttccgaacgccaattaa
DBGET
integrated database retrieval system
