Salvia splendens (scarlet sage): 121782111
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Entry
121782111 CDS
T07627
Name
(RefSeq) exosome complex exonuclease RRP46 homolog
KO
K12590
exosome complex component RRP46
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121782111
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121782111
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
121782111
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
121782111
NCBI-ProteinID:
XP_042035760
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All DBs
Position
20:20868402..20871176
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AA seq
243 aa
AA seq
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MDVERAGGRGANQLRPIDCSRDVLSRAHGSASCSHGETRVLAAVFGPKAGTKKNENPEKA
CIEVIWKAKTGQIGKIEKEFEMILKRTLQNICLLTVHPNTTTSIIVQVVHDDGSLLPCAI
HTTCAALVDAGIPLKSLAVSLCCCLTDSGQILLDPSKLEEQKMKAFVCLVFPSSIHCLLP
EESTPATTKSTEQEIITSLTHGIMTVDDYFHCVEQGRAAITPLSNILKKKMRSQSAGNSS
KAA
NT seq
732 nt
NT seq
+upstream
nt +downstream
nt
atggatgtagagagagcaggtgggcgtggtgctaaccagctgagaccaattgactgttct
cgcgacgtcctcagccgcgcccatggctccgccagctgttctcacggagagactagggtg
cttgctgctgtttttggacctaaagccgggacgaagaagaatgagaaccctgagaaagct
tgcattgaagtcatttggaaagccaaaacgggacagattggaaaaattgaaaaggagttt
gagatgatattgaagagaacattgcaaaatatctgccttttgaccgttcatcccaacacc
accacatcaataatagttcaggttgttcacgatgatggttctcttcttccatgtgccata
cacacaacgtgtgctgctcttgtagatgctggaatccctttgaaatctcttgctgtctcc
ttatgctgttgtctcaccgatagtgggcaaatattactggacccaagcaagctagaagaa
cagaaaatgaaggcatttgtatgcttagtatttcccagctcaattcattgtttactccct
gaagaatcaacacctgcaaccacaaaatcaacggagcaagagatcattacgtctcttaca
catggtataatgacagtggacgattactttcactgcgtagaacaaggaagagctgcaatt
accccgctgtccaatattctgaaaaagaagatgcgatcacaatctgcaggtaactcatcc
aaagcagcttga
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