Salvia splendens (scarlet sage): 121782279
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Entry
121782279 CDS
T07627
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121782279
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121782279
03041 Spliceosome [BR:
sspl03041
]
121782279
03009 Ribosome biogenesis [BR:
sspl03009
]
121782279
03016 Transfer RNA biogenesis [BR:
sspl03016
]
121782279
Enzymes [BR:
sspl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121782279
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
121782279
Spliceosome [BR:
sspl03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
121782279
Complex C
U4/U6.U5 tri-SnRNP related factors
121782279
Ribosome biogenesis [BR:
sspl03009
]
Eukaryotic type
Pre-60S particles
Helicases
121782279
Transfer RNA biogenesis [BR:
sspl03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
121782279
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
Motif
Other DBs
NCBI-GeneID:
121782279
NCBI-ProteinID:
XP_042035975
LinkDB
All DBs
Position
20:complement(18980819..18989939)
Genome browser
AA seq
995 aa
AA seq
DB search
MGSVKRRTLEEATEGCDTPPLKQRRENGNRDENGLIDEPVACLHEVSYPEGYQPLASNNQ
QREAKPAKEFPFSLDPFQLEAIKCLDNGESVMVSAHTSAGKTVVGLYAIAMSLRNKQRVI
YTSPIKALSNQKYREFKEEFSDVGLMTGDVTIDPNASCLVMTTEIWRSMQYKGSEITREV
AWIIFDEVHYMRDRERGVVWEESIVMAPRNSRFVFLSATVPNAREFADWVAKVHQQPCHI
VYTDYRPTPLQHYVFPCGGDGLYLVVDEKGKFREDSFQKALNALIPANEDRRKENGKGPK
GLVAGKAGEDSDIFKMIKMIILRQYDPVICFSFSKRECEFLAMQMAKMDLSDEDEKVNIE
TIFWSAMDMLSDDDKKLPQVSNMLPLLKRGIGVHHSGLLPILKEVIEILFQEGFIKCLFA
TETFTIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDDRGICILMVDE
KLEPSTVKFMLKGSADSLNSAFHLSYNMLLNQIRAADADPENLLRNSFYQFQADRAIPDL
EKQAKILEAERDSIVIEEEDSVENYYSLLKQYKSLKKEIRDIVFSPKNCLPFLQPGRLVS
IQCTKNDDDSPSFSMQDEVTWGVIINFERVKVASEDDANKKPEDASYTVDILTRCRVHKD
EIAKKTIRIVPLKESGEPAVISIPISQIDSLSSVRLIIPRDLLPLEARENTLKKVSEVLV
RFAKEGVPILDPEDDMKVQSSSYRKATRRTEALENLFEKHEVAKSPLIEQKLKVLHTKKE
LTAKIRSLKKAMKSSSVLAFKDELKARKRTLRRLGYITSDDVVELKGKVACEISSAEELT
LTELMFNGVLKDIRVEEMISLLSCFVWQEKLQEAQKPRDELELLFMQLQETARKVAKVQL
ECKVQIDVENFVSSFRPDIMEAVYAWARGSKFYEIMEMTPVFEGSLIRAIRRLEELLQQL
ILAAKSIGETDLEVKFEDAVTKIKRDIVFAASLYL
NT seq
2988 nt
NT seq
+upstream
nt +downstream
nt
atgggttcagtgaagagaaggacgttggaggaggcgacggagggctgcgacactccgccg
ctgaagcagcggagagagaatgggaatcgtgatgagaatggtttgatagatgaacctgta
gcttgccttcacgaagtatcgtatccagaggggtaccagccgctcgcttcaaataatcag
cagcgtgaagcaaagcctgccaaggaattccccttttctcttgatccttttcagctggaa
gctatcaagtgtctcgacaatggagaatccgtcatggtctctgcacatacatctgctggt
aagacagttgtgggcttgtatgccatagcgatgtcgttgcgcaacaagcaacgtgtgata
tatacatctccaattaaagctcttagcaaccagaaatatagagagtttaaagaagagttt
tcggatgttgggttgatgacaggtgacgtcactatcgaccccaatgcgtcttgcttggtt
atgaccactgagatctggcgaagcatgcaatacaaaggatcagaaattactagggaggtg
gcctggattatttttgatgaagtacattacatgagagacagagagagaggtgttgtgtgg
gaagagagtattgttatggccccgaggaactcccgatttgtgtttctgtctgccacagtg
cccaatgcaagggagtttgctgattgggttgcaaaggtgcatcagcaaccatgtcatatt
gtttacacagattatcggccaacaccccttcagcattacgtctttccttgtggaggtgat
ggtctctacttagtggttgatgaaaagggtaagtttcgtgaggacagctttcagaaagct
cttaatgctctgattccggccaatgaggacagaaggaaagagaatgggaaaggtccgaaa
ggtttagttgcgggtaaagctggtgaagatagtgatatatttaagatgatcaaaatgatc
attttgcgccagtatgaccctgtcatatgtttcagttttagcaaaagagaatgtgaattt
cttgctatgcagatggcaaaaatggatctaagtgatgaggatgagaaagtaaacattgaa
actattttctggagtgctatggatatgctgtcggatgatgataagaagctgccacaggtt
tcaaatatgctgcccttgttgaaacgaggcataggtgtacatcactctggtttactgccc
atactgaaggaagtcattgaaatcttgttccaggaaggatttatcaagtgcttgtttgcc
acagagaccttcaccattgggctaaatatgcctgcaaaaactgttgtcttcactaatgtt
cggaaatttgatggagataagtttaggtggatatccagtggggagtatatacaaatgagt
ggccgagctggtcgtcgtggaattgatgatcggggtatttgcatccttatggttgatgag
aagctagagccttcaacagtgaaatttatgttgaaaggaagtgcagattctttgaacagt
gcgttccacttaagctacaatatgcttttaaatcaaatacgagctgcagatgcggatcct
gagaatttgcttcgtaattctttctatcagtttcaggctgatcgtgccattcccgatctt
gagaaacaagcaaagatccttgaagcagagagggattctattgtaatagaagaagaagat
agcgtggaaaactactattctcttctaaaacaatacaaaagtctgaaaaaggaaatacgt
gatatagttttttctccaaaaaattgtttgccttttctgcagcctggaagacttgtttct
atacaatgcacaaagaatgatgatgactccccatcattctctatgcaggatgaggtcaca
tggggagtaatcataaattttgagagggttaaagtagcctctgaagatgatgcaaacaag
aagcccgaagatgcaagctatacagtggatattctcacaaggtgtagagtgcataaggat
gaaattgctaaaaaaacaattagaatcgttcccttaaaggagtctggagagcctgctgtc
atttcgatccctatttcacagattgatagcttaagtagtgtccggctaataataccgagg
gatcttcttccattagaggctcgagaaaatactttgaagaaagtgtctgaagttctggta
agatttgcaaaagaaggtgtacctattctagatcctgaagatgacatgaaggttcaaagc
agctcttacaggaaggcgacacgaaggacagaagcactggagaatctttttgagaagcat
gaagttgctaaatctcctctgattgagcagaagctgaaagtcctgcacacgaagaaggaa
cttacagcaaaaattagatctcttaagaaagcaatgaaatcttcatctgtgttggcattc
aaagatgaattaaaagccaggaaaagaactcttaggagactggggtatattactagtgat
gatgttgttgaactaaagggtaaagttgcttgtgaaatcagcagtgcggaagagttgaca
ttgacagaactcatgttcaatggggttctaaaggatataagggtggaggagatgatatct
cttctgtcatgttttgtttggcaagaaaaactgcaggaagctcaaaagccgcgggatgag
cttgagttgctttttatgcaactacaggagacagcacgtaaggtggctaaggttcagctt
gagtgcaaggtacagattgatgttgagaattttgtgagttctttcagaccagacatcatg
gaagctgtctatgcttgggccagaggatctaaattctatgaaattatggagatgacacct
gtttttgagggcagcttgatccgagcaatcaggagactggaagaactccttcagcagctc
atactagctgcaaaatcaattggtgagacagatcttgaagttaaattcgaggatgctgtc
accaagatcaagagagatatcgtttttgctgcatctttgtacttatag
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