Salvia splendens (scarlet sage): 121782562
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Entry
121782562 CDS
T07627
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03013
Nucleocytoplasmic transport
sspl03015
mRNA surveillance pathway
sspl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121782562
09122 Translation
03013 Nucleocytoplasmic transport
121782562
03015 mRNA surveillance pathway
121782562
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121782562
03041 Spliceosome [BR:
sspl03041
]
121782562
Enzymes [BR:
sspl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121782562
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
121782562
Spliceosome [BR:
sspl03041
]
Complex C
Other components
EJC/TREX
121782562
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
121782562
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Utp25_C
YihI
Motif
Other DBs
NCBI-GeneID:
121782562
NCBI-ProteinID:
XP_042036381
LinkDB
All DBs
Position
20:19152362..19156820
Genome browser
AA seq
428 aa
AA seq
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MGETKEIEAYEEELLDYEEEEEKAPDSVGAKVNGESVKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPIAGQVAALV
LCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNVKIHKDLLKNECPHIVVGTPGRILA
LSRDKELSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPI
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVT
RAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSDVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggcgagacgaaggagatcgaagcctacgaggaggagcttctcgactacgaggaagag
gaggagaaagcacctgattccgtcggtgccaaggtcaacggcgagtccgtgaagaaggga
tatgtggggatccacagttcaggattcagggacttcctcttgaagccagagcttttacgt
gctattgtcgactcgggatttgagcacccgtcagaagttcaacatgagtgtattcctcaa
gctattcttggaatggatgttatctgccaagccaaatctggtatggggaaaactgctgta
tttgtgctttcaacattacagcagattgaaccaattgcaggccaagttgctgcgcttgtc
ctgtgtcatacaagggaattagcttaccagatttgtcatgagtttgaaagattcagcaca
tatttaccagatatcaaggtagctgttttctatggcggtgtcaacgtgaaaatacacaag
gatcttctgaaaaatgaatgtcctcacattgttgttggaactcctggaagaatacttgct
ctgtctagggacaaggaactttctctgaaaaacgtgaggcatttcatactggatgagtgc
gacaagatgctcgagtctcttgatatgcggagggatgtgcaggagatcttcaaaatgacc
cctcatgacaagcaagttatgatgttttcagctactctcagcaaggagattcgacccatt
tgcaagaaattcatgcaagatccaatggaaatatatgtagatgatgaagccaagttgacc
ctgcatggtcttgtacagcactacatcaaattgagtgagctggagaaaaatcggaagttg
aatgatctgctggatgccttagatttcaatcaagtggtcatatttgtcaaaagtgtcacc
cgtgctgcagagctgaataaattgcttgtggagtgtaacttcccatctatatgcattcac
tctggcatgtcccaggaagaaagattaactcggtacaagagtttcaaagaaggccataag
aggattttggtagctacagatttagttggtagaggaatcgacatagagcgagttaacatt
gtgatcaactacgatatgccggattctgcagacacttatctacacagggttggtagagct
ggaaggtttggcaccaaagggcttgctataacatttgttgcatccgcatctgattcggat
gttctcaatcaagttcaggagaggtttgaagttgatattaaggagcttcctgagcaaatt
gatacatcgacatatatgccgtcctaa
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