Salvia splendens (scarlet sage): 121782587
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Entry
121782587 CDS
T07627
Name
(RefSeq) CCR4-NOT transcription complex subunit 3-like isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121782587
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121782587
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121782587
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
121782587
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
Motif
Other DBs
NCBI-GeneID:
121782587
NCBI-ProteinID:
XP_042036418
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Position
20:complement(15391796..15400642)
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AA seq
870 aa
AA seq
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MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD
QMKTWIQSSEIKDKKVSASYEQALMDARKQIEREMERFKICEKETKTKAFSKEGLGQQPK
TDPKEKAKSETRDWLNNVVSELENQIDSFEAEIEGLSVKKGKTRPPRLTHLEASITRHKA
HIMKLELILRLLDNDELSPEEVNDVKDFLDDYVERNQEDFDEFSDVDELYSSLPLDKVES
LEDLVTGPPSLVKGVTASSAVITMKTSLAATPVQTSATTTATIQQVASSLDQVDETAFQD
DVVPRTPPSKGSGPSSPAPQTPPAGLATPGLSIVVGVSSPVSVPSATKEEDITNFPGRKS
SPALAETGLRPIGRGGLPCQPASNIIPSSGNTISSNGALGTIPVTSEMGKRTILGSDDRP
GSSGMVQALASTLSNRAVMPHASKSSDGLGLSDTGSVNDSTVVGSRVFNSPVVPGMQWRP
GNSFQNQNEPGQFRGRTEIAPDQREKFLQRFQQVQLHGQNNLLGIPSIAGGKQYSAQQQN
LLLQQLNAQSSSVTPQIGLGVGVQASGINSVTTSASVQPQPSAIHQPTNQQTFISSTPKD
AETVPNKVEEIQQQQSLTEDSSADSAVNSGLGKNLVAEDELKSPYALEAAAAVASGSLAD
PSQVMREIDLSPGQPLQSASSSGSLGVIGRRSVSDLGAIGDNISASTPNSGAMHDQSYNL
QMLEAAYYRLPQPKDSERAKTYTPRHPAATPPSYPQVQAPMVNNPAFWERLGADTYGTDT
LFFSFYYQQNTYQQYLAARELKKQSWRYHRKYNTWFQRHEEPKVATDDFEQGTYVYFDFH
IASDEQHGWYQRIKTEFTFEYSYLEDDLII
NT seq
2613 nt
NT seq
+upstream
nt +downstream
nt
atgggagcaagccggaagctgcagggcgagatcgatcgagtcctgaaaaaggttcaagaa
ggcgtcgacgtgttcgacagcatttggaacaaggtttatgatacagataatgcgaatcag
aaggaaaaattcgaggccgacttgaaaaaggagattaagaagttgcagaggtacagagac
cagatgaagacatggatacaatccagcgagatcaaggataaaaaggttagtgcctcttat
gagcaggctctgatggatgcccggaagcaaattgagcgtgaaatggaacgatttaagata
tgtgaaaaagaaacaaagacaaaagcattctcaaaagaaggccttggccaacaacctaag
acggatccgaaggaaaaagctaaatcggagactagagattggctgaataacgtggtcagt
gagctggaaaatcaaattgatagctttgaagctgaaattgaaggactttcagttaagaaa
gggaagacaaggccaccaagattgacgcatttggaggcatccatcactcggcataaggct
catattatgaagctggaattgattctaaggctcttggataacgatgaattgagtccagag
gaagtcaatgatgtgaaggatttcttggatgactatgttgaaagaaatcaggaagacttt
gatgagtttagtgatgttgatgagctttacagttccttacctctagacaaggtggagtct
cttgaagatctggttacaggtcctccaagtcttgttaagggagtcactgcttcgagtgca
gttataactatgaaaacttctctggctgcaacacctgttcaaacttcagcaacaaccact
gctaccattcaacaggttgcttccagcctcgaccaggttgatgaaacagcttttcaggat
gatgtagttccaagaaccccaccttctaaaggtagtggccccagttctcctgcaccacaa
acaccaccagcaggccttgcaactcctggcctctcaattgttgtcggtgtgtcatctcct
gtgtctgtgccaagtgctacaaaagaagaggatattacaaatttccctggtcgtaaatca
tcaccagcacttgctgaaactggattaaggcctattggcagaggtgggttgccttgtcaa
ccagcttctaacatcattcctagttctggcaacacaatttccagcaatggagcccttggt
accattcccgtgacatctgaaatgggcaaaagaactatcttgggatcggatgatcgacct
gggagtagtggcatggtgcaggctcttgcatctactttaagtaatcgagcagttatgcca
catgcttcaaagtcaagtgatgggcttggattatctgataccggaagtgttaatgattct
acagtcgtgggcagcagagttttcaattctcctgttgttcctggtatgcaatggcggcct
ggaaattccttccaaaaccagaacgaaccaggccagtttcgtggaagaactgagattgca
cctgatcaaagggagaagtttctccaacgttttcagcaggtacagctgcatggccagaat
aatcttctgggtataccttctattgctggtggaaagcagtactctgcacaacagcaaaac
cttctcttacaacagttaaatgctcaaagctcatctgtcacacctcaaattgggttgggg
gttggagtccaggcttcaggtattaacagtgtaacaacatctgcttcggtgcagccccag
cctagtgcaatccaccaaccaactaatcagcagacattcatatcttcaacgcctaaggat
gcagaaactgtccctaacaaagttgaggaaattcagcagcaacagtccctcacagaagat
tcttctgcagattctgctgtcaactctgggctaggaaaaaatcttgttgcagaggatgaa
ttgaaatctccttacgcgttagaagctgcagctgcagttgcttctggttctcttgctgac
ccttctcaagtgatgcgggagatagatctatctccagggcagcctttacaatcagcatca
tcttctggaagtcttggtgttattggtcgaagaagtgtgtctgaccttggtgctattggg
gataatattagtgcttcaactccaaattctggggcaatgcatgatcagtcatataatttg
cagatgcttgaggctgcttattacagacttcctcaacccaaggattcagaacgtgctaag
acctatactccaagacatccggctgcaactcctccgagctatcctcaagtacaagcccct
atggttaataatcctgccttttgggaacgtcttggtgcagatacttatggcactgatacc
ctcttcttttcattttactatcagcagaatacctatcagcaatacttggctgctagggaa
ctgaaaaagcaatcttggagataccacagaaaatacaacacatggttccagcggcacgag
gagccaaaagttgctacagatgattttgaacaggggacatatgtgtactttgatttccat
attgccagtgatgaacaacatggatggtatcagagaataaagacggagttcacttttgag
tacagttatctagaggacgatttaatcatataa
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