Salvia splendens (scarlet sage): 121782628
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Entry
121782628 CDS
T07627
Name
(RefSeq) serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X1
KO
K04354
serine/threonine-protein phosphatase 2A regulatory subunit B
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121782628
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
sspl01009
]
121782628
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121782628
03036 Chromosome and associated proteins [BR:
sspl03036
]
121782628
Protein phosphatases and associated proteins [BR:
sspl01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-2 (PP2A)
Regulatory subunits
121782628
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Protein phosphatase 2A
121782628
Chromosome and associated proteins [BR:
sspl03036
]
Eukaryotic type
Centromeric chromatin formation proteins
Other centromeric chromatin formation proteins
PP2A (protein phosphatase 2A)
121782628
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_RIG_2nd
WDR55
Beta-prop_EML
Beta-prop_IFT140_1st
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Vmethyltransf_C
ComGF
Motif
Other DBs
NCBI-GeneID:
121782628
NCBI-ProteinID:
XP_042036487
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Position
20:complement(2337657..2345168)
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AA seq
521 aa
AA seq
DB search
MHGGDGREVASAAAGPPTPLEWKFSQVFGERAAGEEVQEVDIISVIEFDKNGNHLATGDR
GGRVVLFERTDAKEHGGNQRDLERMDQVSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKIN
KIRWCQTANGAVFLLSTNDKTIKYWKVQEKKVKKISEIKVDSGKAAGNGGIASSSKSSNS
KQFFANGDYSDRSYNPLSKDLSFPPGGLPSLRLPLVVTSSETSLDARCRRVYAHAHDYHI
NSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPTNMEDLTEVITSAEFHPTHCN
TLAYSSSKGSIRLIDLRQSALCDSHSKIFEEQEAPGSRSFFTEIIASISDVKFARDGRYL
LSRDYMSLKVLPLLWDVNMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLR
VATGSYSNLFRIFGCAPGSTEATTLEASKNPMRRQIQTPARPSRSLTSSISRVVRRGAES
PGPDANGNSFDFTTKLLHLAWHPSENSIACAAANSLYMYYA
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
atgcacggtggtgacggtagagaggtggcatcagctgcggccggtccacctacgccgctg
gaatggaaattttctcaggtctttggcgagcgagcggccggcgaagaagtacaggaagtg
gatatcatctctgtcattgagtttgataaaaatggcaaccatctggctactggtgatcgt
ggtggaagggtggttttatttgaaaggaccgatgcaaaagagcacggtggaaatcaaaga
gatttagagaggatggaccaagtctcacgacacccggagtttcgttacaaaactgaattt
cagagtcacgaacctgagtttgactatctcaagagtttggagattgaggagaaaatcaac
aagatcagatggtgccagacagccaatggtgccgtctttctcctgtcaactaatgacaaa
accattaagtattggaaggtccaagagaagaaggtgaagaaaatttctgaaataaaagtt
gactcgggtaaagctgctggaaacggtggtattgcaagttctagcaaatcttctaattcc
aaacagttttttgctaatggagactattcagatcgttcttacaatcctttgagcaaggat
ttgtcctttcctcctgggggactcccctctctacgattaccactggtagtcacaagtagt
gagaccagtcttgatgcaagatgcaggagagtatatgctcatgcacatgattaccatatc
aattctatctcaaataacagtgatggtgaaacatttatatcagctgatgatctccgaata
aatctttggaacttggaaataagcaatcaaagtttcaatatagttgatgtgaaaccaaca
aatatggaggatctgactgaggtaataacatcagcagaatttcatcctactcactgcaac
actttagcatatagtagttcaaaaggatcgattcgtcttattgatttgcgacaatctgca
ctgtgcgactcacattctaaaatatttgaggagcaggaggcaccgggctcaagatcattt
ttcactgaaattattgcttcaatttcagatgttaagtttgcgagggatggcagatattta
ctgagtcgtgactacatgtcccttaaggttctgcctttgttatgggatgttaatatggat
tctggtccagtggcaactttccaggttcatgagtatttaagaccaaagctctgtgacttg
tacgaaaacgattccatctttgataaattcgaatgctgcctgagtggtgatggtcttcga
gtggctactggttcatacagcaatctatttcgtatatttggctgtgctccgggaagcact
gaggcaactactctagaagcaagcaaaaacccaatgagaaggcagatccaaacccctgct
cggccttccagatctctgaccagtagcatcagccgtgtcgtgaggcgaggtgctgaaagt
ccaggacctgatgccaatgggaactcatttgatttcactactaagctgctccacctagcc
tggcacccatcagaaaactcgattgcttgtgccgccgcaaatagcctgtacatgtactat
gcataa
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