Salvia splendens (scarlet sage): 121783604
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Entry
121783604 CDS
T07627
Name
(RefSeq) THO complex subunit 3-like isoform X1
KO
K12880
THO complex subunit 3
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03013
Nucleocytoplasmic transport
sspl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121783604
09122 Translation
03013 Nucleocytoplasmic transport
121783604
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121783604
03041 Spliceosome [BR:
sspl03041
]
121783604
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
121783604
Spliceosome [BR:
sspl03041
]
Complex C
Other components
EJC/TREX
121783604
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
121783604
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_THOC3
Beta-prop_WDR5
Beta-prop_IFT122_1st
WD40_Prp19
WD40_CDC20-Fz
WD40
WD40_WDHD1_1st
Beta-prop_WDR3_1st
Beta-prop_EML_2
EIF3I
ANAPC4_WD40
Beta-prop_CAF1B_HIR1
WDR55
WD40_Gbeta
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR3_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR19_1st
Beta-prop_NOL10_N
Beta-prop_RIG_2nd
Beta-prop_Aladin
Beta-prop_WDR36-Utp21_1st
Beta-prop_Vps41
Beta-prop_TEP1_C
DSE1_N
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
NBCH_WD40
Beta-prop_WDR75_1st
eIF2A
Beta-prop_WDR35_TULP_N
Beta-prop_EML
Beta-prop_EIPR1
Beta-prop_HPS5
Beta-prop_IFT140_1st
WD40_RFWD3
WD40_MABP1-WDR62_1st
Beta-prop_DCAF12
Tricorn_2nd
TRM82_WD
WDR90_beta-prop_4th
Beta-prop_IFT80_2nd
PAC11
Beta-prop_WDR41
DUF7099
B-prop_COPA_B_2nd
PROPPIN
Beta-prop_Nup120_160
WD_LRWD1
Motif
Other DBs
NCBI-GeneID:
121783604
NCBI-ProteinID:
XP_042037663
LinkDB
All DBs
Position
21:complement(19424505..19430060)
Genome browser
AA seq
346 aa
AA seq
DB search
MRFICYFLRFMHSSISLAKFSRSRVVRDKIAELMDETIPFNTLHSREYQGHKKKVHSVAW
NCAGTKLASGSVDQTARVWHIEPHGHGKAKDIELKGHSDSVDQLCWDPKHADLIATASGD
KTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHKRKF
NYEVNEIAWNMTGDMFFLTTGNGTVEVLAYPSLRAVGTLMAHTAGCYCIAIDPAGRYFAV
GSADSLVSLWDIKEMLCVRTFAKLEWPVRTISFNHTGEYIASASEDLFIDISSVHTGRPV
HQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQTDEGVFRIFGFESA
NT seq
1041 nt
NT seq
+upstream
nt +downstream
nt
atgcgtttcatttgttattttctgcgttttatgcacagcagcataagcctcgcaaaattt
tctagatcaagagttgtacgggacaaaattgcagagctgatggatgagaccataccgttc
aacacactccacagtagagagtaccaaggccataagaaaaaggtgcattcggtggcatgg
aattgcgcgggcacgaaactggcctccggttccgttgatcagactgcccgagtttggcac
attgaacctcatggccatggtaaggctaaagatattgagctgaaggggcattctgatagt
gtagatcagctatgctgggatccgaaacatgcagatttgattgcaacagcatccggtgac
aagaccgttcgcttatgggatgctcgtagtggaaaatgttcacagcaagcagaacttagt
ggggaaaacattaatattacttataagcctgatggaacccacattgctgttggtaatagg
gatgacgagttaacaatattggatgtacgcaagtttaagcccatacataagcgcaagttc
aactatgaggtgaatgagatagcatggaacatgacgggtgatatgttctttttaactact
gggaatggtactgttgaagtgcttgcctatccatcactccgagcagttggaaccctcatg
gctcatacagcaggttgctattgtattgcgattgacccggcaggaaggtattttgctgtc
ggaagtgccgactcattagtcagcctctgggatataaaggagatgctttgtgtccgtaca
ttcgcaaaactcgagtggcctgttcggactattagtttcaatcacactggagaatacatt
gcttctgccagtgaggacttgttcattgatatttccagtgttcacacaggccgaccagtc
caccaaattccatgccgtgcagccatgaacagtgtggagtggaatcccaagtacaactta
cttgcatatgctggagacgacaagaacaaataccagaccgatgaaggtgtttttcgaata
tttggctttgagagcgcctag
DBGET
integrated database retrieval system
