Salvia splendens (scarlet sage): 121783996
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Entry
121783996 CDS
T07627
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 52C-like
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
sspl
Salvia splendens (scarlet sage)
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121783996
03041 Spliceosome [BR:
sspl03041
]
121783996
03036 Chromosome and associated proteins [BR:
sspl03036
]
121783996
Enzymes [BR:
sspl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121783996
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
121783996
mRNA cycle factors
Common to processing body (P body) and stress granule
121783996
Spliceosome [BR:
sspl03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
121783996
Chromosome and associated proteins [BR:
sspl03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
121783996
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
121783996
NCBI-ProteinID:
XP_042038111
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All DBs
Position
21:27643161..27648349
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AA seq
512 aa
AA seq
DB search
MSSPWFADLAPGFVPSQLADKFDELDVGEEEKGSVPVEAEGVDIPPPVTSFQEMRFSAKS
LNDNIRRCNYVKPTPIQSHAIPVAMIGRDLMACAQTGSGKTAAFCFPIINAIVVDKMRIT
IRRISAGPTAFPVALILAPTRELSCQIYEEAKKFSYQTGVKVVVAYGGAPIFQQLQNLAR
GVDILVATPGRLVDLIERRRVSLKNVKYLALDEADRMLDMGFERQVRRIVQQSGMPPPGA
RQTMLFSATFPAEIKRLASDFLSNYIFLAAGKVGSSTTLIVQRVEYVPDMKKREYLINLL
TSEITEGAGLTLIFVETKRGADALERWLCRQGYLSAAIHGDKVQVERERALRSFRQGYTP
ILIATNVAARGLDIPHVAHVINFDLPRAIGDYVHRIGRTGRAGKSGLATAFFNDKNLPIA
KGLVELMQEASQQVPTWLTEYAQRSCEGSNRSSNHDYYRNNGFVDDNCSQYGTSMEAPYD
DHFASSSGGATTLNSPYAADSYGGVTACGWDY
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcgccatggttcgccgatctggcacccggcttcgtcccctcccaactcgcagac
aagttcgacgagttggatgttggcgaagaagagaaaggcagcgtgcccgtggaggcggaa
ggggtggacattccgccgccggtgacgtcatttcaggagatgagattctcggccaagtcc
ttgaacgacaacatacggcgctgtaactacgtgaagccgacccctatccagagccacgcc
attccggtcgccatgatcggtagggatttgatggcgtgtgctcagacgggatctgggaag
actgccgccttctgtttccctattatcaacgctattgtggttgataagatgcggataact
atacgccgtatttccgccggccctacggctttccctgtcgcgctgattctggctcccact
agggagctgtcctgtcagatttatgaggaggccaaaaagttttcgtatcaaactggagtg
aaagtggtggttgcttatggtggagctcctatttttcaacagttgcaaaatctggcaagg
ggtgtggacatcttggttgctactccaggccgacttgtagacctgatcgaaagaaggcga
gtgtcccttaagaatgtcaagtatttggcattggatgaagctgacaggatgctcgatatg
ggctttgaacgtcaagtgcgcaggattgttcagcagtcggggatgcctccaccaggtgca
aggcagactatgcttttcagtgcaacatttccagctgaaattaagaggcttgcatcagat
tttctatccaactacatatttctagctgctggaaaggttggttctagcaccactctcatt
gttcaaagagttgaatatgtccctgacatgaagaaacgagagtatctgattaatcttctc
acttccgaaatcactgagggtgctggtttgacactgatctttgtagagacgaagagagga
gcagatgcactggaacgctggttgtgcaggcaaggttacctctccgctgctattcatggc
gacaaggtgcaagtggagagagagcgggcattgagatcatttagacagggctacactccg
atcctcatagcaacaaacgttgctgcacgcggattggacattcctcacgtagctcatgtc
ataaacttcgacttgcctagagccattggcgactatgttcacaggataggacggactggc
cgtgcaggcaaatctggtcttgcaacagccttctttaatgacaagaacttgcccattgca
aaagggcttgttgaattgatgcaagaagctagccagcaagtccccacttggctcactgaa
tatgcccagagatcttgtgagggcagcaatcggtcatccaaccatgactattacagaaac
aacggctttgtggatgacaactgtagccaatatggcacttctatggaagcgccatacgat
gatcattttgcctcttcatcaggtggggcaaccacattgaattcaccatatgctgctgat
tcgtatggtggggtgactgcctgcggctgggattattaa
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