Salvia splendens (scarlet sage): 121784342
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Entry
121784342 CDS
T07627
Name
(RefSeq) nuclear pore complex protein NUP62-like
KO
K14306
nuclear pore complex protein Nup62
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121784342
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121784342
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
121784342
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Nsp1_C
Laman-like_dom
APG6_N
Prefoldin_2
COG3_N
Motif
Other DBs
NCBI-GeneID:
121784342
NCBI-ProteinID:
XP_042038431
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Position
2:4011826..4017118
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AA seq
777 aa
AA seq
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MAGTGFSFSSSSAPAFGTTSPAFGAASGASFGFGTATTSSSTPSFGFASNPSSASSAPSF
GFGSGAASSGSSLFGGSSLFGSSSSSVATGSNIFGSAPSSGVFGFSSAGTGQTANAFGSS
TPTSTPTPAPSTPTPSTSPFGSPAPGSNLFGSGAPTPSLFGNTSSSAGNTGSLFGSGASA
TPNPFGSTTASSAPAFGSGLALNSGLFGSSTSAPSTSTATATATAAPQFGVSSAPTGLFG
SSTPASTGGNPPSLFGANSGSTSSLFGSSTSFGSSSASPLGVAPSTTSSSSASPVSGFSF
LSSVASTSAFSISSSAASAPGFSFPSASASVSAAPGLSIPSSPATPAPAFSFNTASSTTS
SGFSFLKSTTSTASSASATTSVSSSPGFSFASAPSLSSSSALTFLSSSASTSLFSTVTTT
TATSSAAPSVSSASSGLTFPALTVPALGTSASAPTSGFTGFGTTSTPASGTSASAPTSGF
TGFGTTSTPASSSGSASSFSLSLKTPATAGSLASQAQSSVALPSFGVTAASSTTATGSST
SYAAQTSSVLVAASSSGAAPATSTAPASTPKLPSEITGKTVEEIIKEWNGELQERTGKFR
KQANAIAEWDRRILQNRDILLGLESEVAKVVETQGSLERQLELIETHQDEVDKALQSMEE
EAERLYKEERGMLLDDDAASTRDAMYEQAELIERGLEQMTEQIKTVINSLNASQGGELEA
SDGMNPLDVVVRILNNQLSSLMWIDEKAEEFSSRIQKLASHGSTADRELTGPKLWLN
NT seq
2334 nt
NT seq
+upstream
nt +downstream
nt
atggccggcacaggattctcattctcctcctcctccgcacctgccttcggaaccacatcg
cctgcttttggcgccgcctccggagcctcatttggctttggcactgcaacgacctcctcc
tccacaccttcttttggctttgcctccaaccctagctccgcctcctccgcaccttcgttt
ggttttggatcgggagctgcgtcgtctggctcatctctgttcggcggttcctcgctcttc
ggctcatcctcttcctccgtggccactggctccaacatttttggatcagctccgagttct
ggcgttttcggattctcgtctgcaggcacaggccaaacagctaatgcatttggttcgtcg
actccgacttcgactccaactcccgctccatcaacccccacgccttccacatctccgttt
ggatcccctgcccccggatccaaccttttcgggtcgggtgctccaactcccagtctattt
ggtaatacttcttcttccgcgggcaataccggctctctttttgggtcaggggctagtgca
acgcctaatccttttggatcaactacggcctccagtgccccggcatttgggtcgggcctg
gcactgaactcagggctatttggctcgtcgacatcggctccatccacttccactgccact
gccactgccactgccgccccacaatttggggtaagttctgcgcctacaggcttatttgga
tcctcaactccagcttctaccggtggcaatcctccgtctttgtttggggcaaattctgga
tcaacttcaagtctttttggttcttccacctcatttggatcatcttcggcttcgccattg
ggtgtggcgccgtcgaccacttcttcaagttcagcttcccctgtttctggattttcattc
ctcagttcggttgcttcgacttcagcattctccatttcaagttcagctgcgtcagcaccc
gggttctcattccccagtgcttcggcttcagtctctgccgcgcctggactttcgattccc
tcatcaccagccacgcctgctcctgcattttcatttaatacggcttctagcaccacttcc
tctggcttttcgtttttgaagagtaccactagcactgcctcctcagcatcggccacaacg
tctgtatcttcttcacctggtttttcatttgcttctgcaccatctctttcgagttcttcg
gccttgacatttctgagttcttcggcctcgacatctctcttttcaactgtcacaacaact
accgcaaccagttcagcagctccaagtgtgtcttctgccagttctggtttgacgtttcca
gcattgacggtacctgcattggggaccagtgcatctgctccaacttcagggtttacaggt
ttcggcacaactagtacgcctgcatcagggaccagtgcatctgctccaacttcagggttt
acaggtttcggcacaactagtacgcctgcatcatcctctggaagcgcaagttctttttca
ctatctttgaaaacaccagcaactgcaggctcacttgcatcacaagcacaatcaagcgtt
gcactgccttcttttggtgttacagctgcgagctcaacaacggcaacaggctcaagtacc
agttatgctgctcaaacatcatctgttctagttgcagcttccagtagcggggctgctcca
gccactagtacagcaccggcatctacgccaaagttaccatccgaaattactgggaaaaca
gtcgaggagatcattaaagagtggaatggggaactgcaggagcgtactgggaagtttagg
aaacaagctaatgctatagctgagtgggatcgcaggattctacagaatcgtgacattctt
cttggccttgagagtgaagttgcgaaagtagttgaaacacaaggtagcctggagcggcag
ctggaactaattgaaactcaccaagatgaggttgacaaagccctgcaaagcatggaggag
gaagctgagcgactgtataaagaggaacgtggaatgcttcttgatgatgatgctgcatct
acacgagatgcaatgtatgagcaggctgaactcatagagcggggattggagcagatgaca
gaacagatcaaaacagttataaacagtcttaatgccagtcaaggtggagagcttgaggca
tcagacggaatgaatcccctagatgttgttgtccgcatattaaacaatcaactgagttca
ttgatgtggattgatgagaaggccgaggagttctcttcacgtattcagaagcttgctagc
catggctctactgctgatcgtgaactgactggccctaagctgtggttgaactga
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