Salvia splendens (scarlet sage): 121784838
Help
Entry
121784838 CDS
T07627
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121784838
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sspl03041
]
121784838
03009 Ribosome biogenesis [BR:
sspl03009
]
121784838
Enzymes [BR:
sspl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121784838
Spliceosome [BR:
sspl03041
]
Complex A
U1 snRNP components
U1 related factors
121784838
Complex B
121784838
Ribosome biogenesis [BR:
sspl03009
]
Eukaryotic type
Pre-60S particles
Helicases
121784838
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
121784838
NCBI-ProteinID:
XP_042039016
LinkDB
All DBs
Position
21:1005020..1008989
Genome browser
AA seq
627 aa
AA seq
DB search
MFSNHDSRLHDAGSYRQRRVDLVGPPPMMIPPPMPDGAPPSYGRGGPHVAPPFMVGGARS
GYQIDHGAGRGFGAGYGGGFTDQGRGGGRGGFGGRGHSYNGVGDRGGHEGGRKGHFSGRS
FDHGRGGGFGGGRGFSGGRGGRGGRSRGDDLDSISLPKPDFSGLIPFKKDFYVESPSVRA
MTEQEVMMYRARREITVEGHDVPKPIRMFEEASFPGYCLEVIARLGFVEPTPIQSQGWPM
ALRGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLAQGDGPIVLVLAPTRELAIQIQEEA
LKFGSVANIRSTCIYGGAPKGPQIRDLKRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVL
DEADRMLDMGFEPQIRKIVSQIRPDRQTLYWSATWPREVETLARQFLRNAYKVIIGSQEL
KANQSIHQIVEVMTDMEKYNRLIRLLKEVMDGSKILIFVETKKGCDQVTRQLRMDGWPAL
SIHGDKNQDERDWVLAEFKSSRTPIMIATDVAARGLDVKDIKVVVNYDFPSNLEDYVHRI
GRTGRAGATGTAFSFFTHANVKHARELIKILQQAGQAVPPQLAALSRTAGSDMGGSGRNV
RSRGRGGGGFGNRSGSNVIPIGGRRPY
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atgttcagcaaccatgattctagactccacgatgccggatcttaccgacagcgccgagtt
gatttggttgggccgccaccgatgatgattccgccccctatgccagatggtgctccgccc
agctatggccgcggaggtcctcatgtggcacctccgtttatggtgggtggtgctaggagt
ggatatcagattgatcatggtgctggaagagggtttggagctggttatggtggtggtttt
actgaccaaggtagaggtggaggtaggggagggtttggtggcagaggacatagctataac
ggcgtaggagataggggtggccatgaaggtgggagaaaaggtcatttctcgggaaggagt
tttgatcatggtcgtggtggtggttttggtggaggtcgtggttttagtgggggtcgtggt
ggcagaggaggtaggtcgaggggggatgacttggacagcatttcgcttcctaaacctgat
tttagtgggttgattccctttaaaaaggatttttatgtggagagtccatctgtgagggca
atgactgagcaggaggtgatgatgtatcgtgcacgtcgggagattactgttgaaggacat
gatgtccccaaacctatccggatgtttgaagaagcaagtttccctggttactgccttgag
gtaattgccagactggggtttgttgagccaacacctattcaatcacaaggatggcccatg
gcattaagaggtcgagatcttataggcattgctgagacgggttctggaaaaactttgtca
tatttgctgcctgcttttgttcatgttagtgctcagcccaggttagctcaaggtgatggt
cccatcgtactagtcctagcacctactagagaattagctattcagattcaagaagaagct
ttgaagttcggatcagttgctaatataagaagtacttgtatatacggcggtgccccaaag
gggccacaaattcgtgatcttaaaagaggagttgaaattgtcatagctacacctggtaga
ttgattgacatgttggaagcgcagcacactaacttgcgaagagtgacttaccttgtgcta
gatgaggccgaccgtatgctagatatgggatttgaaccccaaatcaggaaaattgtttct
cagattcgcccagatagacagaccctgtactggagtgccacatggcctagggaggtggaa
actctggcaagacagttcctacgcaacgcctacaaggtcatcattggatctcaagaactg
aaagcaaatcaatctatacatcaaattgttgaagttatgactgatatggagaaatataat
aggttgatcagattgctgaaagaagtgatggatgggagtaaaattttaatttttgtggag
actaaaaagggatgtgatcaagttacaagacaactaagaatggatggatggccagctctg
tccatacacggtgacaaaaaccaggacgaaagggattgggttctagctgagtttaaaagt
agcagaactcctataatgattgctactgatgttgctgctcgtggcctcgatgtgaaggac
attaaagtcgtagtcaattacgatttcccttcaaatttggaggattatgtccataggatt
ggcagaactggtcgtgcaggagccacgggaactgctttctcatttttcactcatgcaaat
gtgaagcatgctagagaacttatcaagattctgcaacaagctgggcaggctgtgccgcct
caacttgctgctttgtcacgaactgctggatcggatatgggagggtcagggcgtaacgtc
cgatccagaggccgaggaggtggcggctttggcaaccgttcggggtctaatgtgatacct
attggtggaagaaggccttattag
DBGET
integrated database retrieval system
