Salvia splendens (scarlet sage): 121784877
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Entry
121784877 CDS
T07627
Name
(RefSeq) general negative regulator of transcription subunit 3-like isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121784877
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121784877
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121784877
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
121784877
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
Motif
Other DBs
NCBI-GeneID:
121784877
NCBI-ProteinID:
XP_042039070
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All DBs
Position
21:20182194..20193261
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AA seq
870 aa
AA seq
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MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALMDARKQIEREMERFKICEKETKTKAFSKEGLGQQPK
TDPKEKAKSETRDWLNNVVSELENQIDSFEAEIEGLTVKKGKTRPARLTHLEESITRHKA
HIMKLELILRLLDNDELSPEEVNDVKDFLDDYVERNQEDFDEFSDVDELYSSLPLDKVES
LEDLVTGPPSLVKGVTASSAVITMKTSLAATPVQTSATTPATIQQVTSTLDQLDDTVFQD
DAVARTPPSKGSGLSSPAPQTPPEGLATPGITNVVGVSSPVAVPSAAKEEDITNFPGRRS
SPALAETGLRALGRGGLPGQPASNILPSSGNTISSNGALGAVPLLSEMGKRNILGSDDRP
GSSDMVQALASPLSNPAVMPQTAKSSDGLGSSDPGSVNDSAVGGSRVFSSPVVPGMQWRP
GNSFQNQNEPGQFRGRTEIAPDQREKYIQRFQQVQLHGQNNLLGMPSISGGKQYSAQQQN
ILLQQFNAQSSSITPQLGLGVGVQASGINSVTTSASLQTQPSAVHQPANQQTIISSTPKD
AENVLNKVEEMQQQQSLVEDSSADSAVNSGLGKTLVAEDELKSPYALDAAAAVASGSIAE
PSQVIREIDLSPGQPLQSASSSGSLGVIGRRSVSDLGIIGDNISASTPNSGGMHDQSYNL
QMLEAAYYRLPQPKDSERAKTYTPRHPAATPPSYPQVQAPIVNNPAFWERLGADTYGTDT
LFFSFYYQQNTYQQYLAARELKKQSWRYHRKYNTWFQRHEEPKVATDDFEQGTYVYFDFH
IASDEQHGWCQRIKTEFTFEYSYLEDDLII
NT seq
2613 nt
NT seq
+upstream
nt +downstream
nt
atgggagcaagcaggaagttacagggcgagatcgatcgggttctgaagaaggttcaagaa
ggtgtcgacgtgttcgacagcatttggaacaaggtttatgatacagacaatgcgaatcag
aaggaaaaattcgaggccgacttgaaaaaggagattaaaaagttgcagaggtatagagac
cagatcaagacatggatacagtccagcgagatcaaggataagaaggttagtgcctcttat
gagcaggctctgatggatgctcgaaagcaaattgagcgtgaaatggaacgatttaagata
tgtgaaaaagaaacaaaaacaaaagcattctcaaaagaaggtcttggccaacaacctaag
acggatccaaaggaaaaagctaaatcagagacgagagattggttgaataacgtggtcagt
gagctggaaaatcaaattgatagttttgaagctgaaatagaaggacttacagttaagaaa
gggaagacacggccagcgagactgacgcatctggaggaatccatcactcggcataaggct
catattatgaagctggaattaattctaaggctcttggataatgatgaattgagtccggag
gaagtcaatgacgtgaaggatttcttggatgactatgttgaaagaaatcaggaagacttt
gacgagtttagtgatgttgatgagctttacagttccttacctctagacaaggtggagtct
cttgaagatctagttacaggtcctcctagtcttgttaagggagttactgcttccagtgca
gtcataactatgaaaacttctctggctgcaacacctgttcaaacttcagcaacaacccca
gctaccatccaacaggttacttccaccctcgaccagcttgatgacacagtttttcaggat
gatgcagttgctagaaccccaccttctaaaggtagtggcctgagctctcctgcaccacaa
acaccaccagaaggtcttgcaactcctggcatcacaaatgttgtcggtgtatcatctcct
gtggccgtgccaagtgctgcaaaagaagaggatattacgaatttccctggtcgtagatca
tctccagcacttgctgaaactggattaagggctcttggcagaggtgggttgcctggtcaa
ccagcttctaacatccttcctagttctggcaacacaatttccagcaatggagcccttggt
gccgttcccttgttatctgaaatggggaaaagaaatatcttggggtctgatgatcgacct
gggagtagtgacatggtgcaggctcttgcatctcctttaagtaatcccgcagttatgccc
caaactgcaaaatcaagtgatgggcttggatcatctgatcccggaagtgttaatgattct
gcagttgggggcagcagagttttcagttctcctgttgttcctggtatgcaatggcggccc
ggaaattcgttccaaaaccagaacgaaccaggccagtttcgtggaagaactgagattgca
cctgatcaaagggagaagtatatacaacgatttcagcaggtacagctgcatggccagaat
aatcttctgggcatgccttctatttctggaggaaagcagtactctgcacaacagcaaaac
attctcttacaacagttcaatgctcaaagctcatccatcacacctcaactagggttgggg
gttggggtccaggcttcaggtattaacagtgtaacaacatctgcttcactgcagacacag
ccaagtgcagtccaccaacctgctaatcagcagacaatcatatcttcaacacctaaggat
gcagaaaatgtccttaacaaagttgaggaaatgcagcagcaacagtccctcgtggaagat
tcttctgcagactctgctgtcaactctgggctaggaaaaactcttgttgcagaggatgaa
ctgaaatctccttacgctttagatgctgcagctgcagttgcctctggttctattgctgag
ccttctcaagtaatacgggagatagatctatctccaggacagcctttacaatcagcttca
tcttctggaagtctcggtgttattggtcgaagaagtgtgtctgaccttggtattattggg
gataacattagtgcatcaactccaaattctgggggaatgcatgatcagtcgtataatttg
cagatgcttgaggctgcttattatagacttcctcagcccaaggattcagaacgtgctaag
acctatactccaagacatcctgctgcaactcctccgagctatcctcaagtacaagcccct
attgttaataatcctgccttttgggaacgtcttggtgcagatacttatggcactgatacc
ctgttcttttcattttactaccagcagaatacctatcagcaatacttggctgctagggaa
ctaaaaaaacaatcttggagataccacagaaaatacaacacatggttccaacggcatgag
gagccaaaagttgctacagatgattttgaacaggggacatatgtgtattttgacttccat
attgccagtgatgaacaacatggatggtgtcaaagaattaagacagagttcactttcgag
tacagttatctagaggatgatttaataatatag
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