Salvia splendens (scarlet sage): 121784990
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Entry
121784990 CDS
T07627
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8-like
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121784990
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121784990
03036 Chromosome and associated proteins [BR:
sspl03036
]
121784990
Enzymes [BR:
sspl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121784990
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
121784990
mRNA degradation factors
5'-3' decay
Decapping complex
121784990
Chromosome and associated proteins [BR:
sspl03036
]
Eukaryotic type
Gene silencing
piRNA pathway
121784990
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
121784990
NCBI-ProteinID:
XP_042039240
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All DBs
Position
2:5131442..5136224
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AA seq
509 aa
AA seq
DB search
MSSRARYPPPGMGGGRGGSGGGGMNQYGGGGMNQYGGANPNFQPRFYNQQYVQRSQTQNF
QNNQSMQNPNQSMQNPQPQQWLRRTPPADSSADEVEKTVQSEAIDSSSQDWKERLKLPPP
DTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIVLTGSDILARAK
NGTGKTAAFCIPALEKIDQDKNCIQAVILVPTRELALQTSQVCKELGKHVQIEVMATTGG
TSLKDDIMRLYQPVHLLVGTPGRILDLSRKGVCHLDECNMLIMDEADKLLSPEFQPSIEE
LISFLPTNRQILMFSATFPVTVKNFKDRYLRRPYIINLMDELTLKGITQFYAFVEERQKV
HCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRN
GACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYED
RFNLYRIEQELGTEIKQIPPHIDQGIYCL
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
atgagttcacgtgcgagatacccgccgccgggtatgggcggaggcagaggaggctccggc
ggaggtggaatgaaccagtacggtggaggtggaatgaaccagtacggcggtgcaaaccct
aattttcaacctagattttacaatcaacagtatgtgcagaggagtcaaacgcagaacttt
cagaataatcaatcgatgcaaaaccctaatcaatcgatgcaaaaccctcagccgcagcaa
tggctgcgcagaacgccgccagcggactcctccgctgatgaggttgagaagactgtacag
tcagaggctattgattcgagttcgcaagattggaaagaacgattgaagttacccccacca
gacacccgatataggactgaggatgttacagctaccaagggaaatgaatttgaagactac
tttttgaagcgtgagctactaatgggaatatatgagaagggttttgaaagaccatctcct
atccaagaggagagtattcctattgttctcacgggaagtgatatattggccagagccaaa
aatggaactgggaaaacggctgccttttgtattcctgctttggagaaaattgatcaagat
aagaactgtattcaagctgttattcttgtcccaaccagagaattggctcttcaaacgtca
caagtatgtaaagaacttgggaagcacgtgcaaattgaagtcatggctactaccggtgga
actagcctaaaggatgacataatgcggctgtatcagccagttcatttacttgttgggact
cctggaagaatccttgatctttctagaaaaggggtttgccacttggatgagtgcaatatg
cttataatggatgaggcagataagcttttgtctccagagtttcagccttctatcgaggag
ttaattagcttcttgcctacaaatcgtcagatccttatgttctccgccacattccctgtc
actgtaaaaaacttcaaagatcgatacctacgtaggccctatatcatcaacctcatggac
gagctaaccctgaagggtataacccaattttatgcttttgtggaagaaaggcagaaagtt
cactgcctcaacacactcttttccaagcttcaaattaaccagtcaatcattttctgcaat
tccgtgaatagagttgagcttcttgccaagaaaatcactgaacttgggtattcatgtttc
tatattcatgctaaaatgctccaagatcatcgcaacagagtattccatgacttccgtaat
ggtgcctgcagaaatctagtttgcactgatttatttacaagaggtatagatattcaagca
gttaatgtcgtcatcaattttgacttccctaagaattcagaaacgtatttacatcgggtt
ggtcgatctggaaggtttgggcaccttggtttagctgtgaatctgatcacatatgaggat
cggttcaatctgtatagaattgagcaagaactagggactgagataaagcagatccctcca
catatagatcaaggtatatactgtctgtga
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