Salvia splendens (scarlet sage): 121785058
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Entry
121785058 CDS
T07627
Name
(RefSeq) actin cytoskeleton-regulatory complex protein PAN1-like
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03013
Nucleocytoplasmic transport
sspl03015
mRNA surveillance pathway
sspl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121785058
09122 Translation
03013 Nucleocytoplasmic transport
121785058
03015 mRNA surveillance pathway
121785058
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121785058
03041 Spliceosome [BR:
sspl03041
]
121785058
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
121785058
Spliceosome [BR:
sspl03041
]
Complex C
Other components
EJC/TREX
121785058
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
Motif
Other DBs
NCBI-GeneID:
121785058
NCBI-ProteinID:
XP_042039333
LinkDB
All DBs
Position
21:2722119..2726247
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AA seq
694 aa
AA seq
DB search
MSSPYVKIGNRTVDQLKVTELREELKRRRLTSSGLKQDLVKRLDEALRIEMQSLEEAQDE
PSQPEVPVEKENAVTDVNDSAKAFTGRDIDIVVTIDDSRGSSGEGKVIETGLVQGTEFAG
LEGGQVPEPSFVETTEVEKITEPVKILEESNSQDHGTNEDADATILLNADGSMQEDAKVE
LSAPNTNEGIQSTEQRENDDSSTLEPGSSVQTLKYQVSAVDPNLGFQVTSDSVSTESVSI
IEKNELKIDVINDNVKLELDVKPGTVQQSPNVAVPDGGESHPMDVEEPLDKNNVKDGLDI
KDVKEPLDKNDDKVDLDIKDVEELHDVKSIDSGDADPPEKLSLDRSSGDDSMEEDIMESK
QMDGKSDSFTENVENSGTPSVKEEDHVDVVGHDKPVEMETASGPTSVKRKFQDKEAVGNH
DAEKKVRRWNTEGLKSSEPQSGSITPKGSSEPSFKPITGANSLANVEEAPKERVVPPSSK
PPTNSLRIDHFLRPFTLKAVQELLGKTGTVTSFWMDHIKTHCFVSYSSVEEALETRNAVY
NLQWPTNGGRLLVAEFVDPQEVKSRVEAPLASPAAPSPTTVPTQSPSVAQPSPRQQLMKQ
QIPPPLPPPPLSNPPPQVRERLHPPREQPVPARDRLNLPPPPPLPAAEKVVDPPIVTLDD
LFRKTKAPPRIYYLPLSDEVVASKLKTPGKNVTQ
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcgccatatgttaaaattggcaatcgaacggttgatcaattgaaggtcactgag
ctgagggaagagctcaagaggcgtagattgactagtagtgggttgaaacaagatctggtg
aaacgtctggatgaagcacttcgtattgaaatgcaaagtttggaggaagcacaagacgaa
ccttcacagcctgaggttcctgttgaaaaagaaaatgcagtgactgatgttaatgatagt
gctaaggcttttaccgggagagatattgacattgtcgtaacgatagatgactccagaggg
tcatcaggtgaaggcaaagtcattgaaacaggcttggtgcagggaaccgagtttgctggg
ctggaaggtggacaggttcctgagccctcttttgtggaaactactgaagttgaaaagata
actgaacctgtgaagattttggaagaatcaaactcacaagatcatggaacaaatgaggat
gcagatgctactatattgcttaatgctgatggatccatgcaggaggatgcgaaggttgaa
ctctcagctcctaatactaatgaaggtattcaatcaacggagcagagggaaaacgatgat
tccagtacactcgaaccaggttccagtgtccagacactgaagtatcaggtatctgcggtt
gaccctaatttagggtttcaagtaacatctgattctgtttctactgaatctgtctccatt
attgagaaaaatgaactaaagattgatgtaattaatgataatgtcaaattagaactagat
gttaagcctgggacggtgcagcagtctcccaacgtcgctgtccctgatggtggtgaatca
catccaatggatgttgaagagccacttgacaaaaataatgtgaaagatggtcttgacata
aaagatgttaaagagccacttgacaaaaatgatgacaaagttgaccttgacataaaagat
gttgaagaacttcatgatgtcaagagcattgatagtggggatgcagatccccctgagaaa
ttaagtttagatcggagttctggcgatgattccatggaagaggatataatggagagtaaa
cagatggatggcaagtctgattcatttactgaaaatgtggagaactctggaacacctagt
gtgaaagaggaggatcatgtggacgtggttggtcatgataagcccgtagaaatggagaca
gcttctggaccgacctctgtgaaaagaaaatttcaagacaaagaagccgttggcaatcat
gatgctgagaagaaggtccgcaggtggaacactgaaggcttaaagagttctgagccacag
agtggttctataacaccaaaaggttcatctgaacctagttttaagcccataacaggtgct
aactccttagctaatgtagaggaggctcccaaggagcgtgtggttccaccatcatcaaag
ccaccgactaattctctcagaattgatcattttctgcgccctttcactttgaaagctgtc
caagaacttctaggaaagactggaactgttaccagtttctggatggatcacatcaaaacc
cactgttttgtctcatactcatctgttgaagaggctttagaaactcgtaatgctgtatac
aatctccagtggccaacaaacggggggcgcctcttggttgcagagtttgttgatcctcaa
gaagtcaaatcacgcgtggaggctccacttgcgtctcctgcagctccctcaccaactaca
gttccaactcaatccccatctgtcgcacaaccttccccacgacagcaattaatgaagcag
cagataccacctcctcttcctccaccaccgctatccaacccaccaccccaagtcagggaa
cggctgcatccaccaagggaacagcctgtcccggcaagggacaggctgaacctcccacct
ccacccccgcttccagctgcggagaaggttgttgatccaccaattgtcactctggatgac
ctatttcggaaaaccaaggccccaccacgcatctactacctgccgttgtctgatgaagta
gttgcatcaaagctgaagacaccggggaagaatgttactcagtag
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