Salvia splendens (scarlet sage): 121785136
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Entry
121785136 CDS
T07627
Name
(RefSeq) nijmegen breakage syndrome 1 protein-like isoform X1
KO
K10867
nibrin
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
121785136
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sspl03032
]
121785136
03400 DNA repair and recombination proteins [BR:
sspl03400
]
121785136
DNA replication proteins [BR:
sspl03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
121785136
DNA repair and recombination proteins [BR:
sspl03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
121785136
BRCA1-C complex
121785136
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
FHA
BRCT
Nbs1_C
PTCB-BRCT
Yop-YscD_cpl
LTD
Motif
Other DBs
NCBI-GeneID:
121785136
NCBI-ProteinID:
XP_042039439
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Position
21:complement(21618443..21626332)
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AA seq
566 aa
AA seq
DB search
MKIPWWDVARDVAYYISENEYYIFKKGTYKVGRKGCDIIITKDKGVSRVHAEIIVNEMVC
MDHLENIHSDNSSKVQIRDCSKYGTFISRNLDSKEKVHEFPNKEATLKDGDVVTFGTGIA
QYRFSYVPLILCASSSKPSEMNKLKTKMLTIGASVTQAWTSKCTHMVIDDFNPINDEIIN
SIVARKPLVRFSWIEVVAGKTFSTEIPSRLSHAPTLILEGASLKVADSQSREQCLEGYTF
MLDSKHKYKFKEKMCMLLEAGGAKVVYAETLDQCSQNTRENLVCVMPAGMTSSSGNFKKF
SYLPTVNEMELISAVVSGHLDPSVMASAPVLVTSSCSTDVTVVADSDVEMETATSVRTSA
AVNLISSAEDECETKMGIHETERSERNCKAENVVHVIESTEHDSVAKTEAGATDPGSPGF
LHSKGEALKLDTPYWSSISRDRDEHMTRNDEGHPSDSENVDIIYSESLIVRESNSVQFDH
SARNGAAANFKRFRKMSVPSGNSFSNLIPFSEYPYKDSDYGNEDVAESIKEEKKRKQMEA
IADDLFNNDKGRRRASGTLPSLFARR
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
atgaagattccctggtgggatgttgctagagatgtggcttactatatcagtgaaaatgag
tactatattttcaaaaaagggacgtacaaagtcggacgaaaaggatgtgacataatcata
accaaagataaaggggtttcaagggtccatgctgaaattattgtaaatgaaatggtttgc
atggatcatttagaaaatatacattcagataattcctctaaagttcagataagagactgc
tccaagtatggaaccttcatcagcagaaatctggactctaaagaaaaagttcatgaattt
ccaaataaagaagcaacattgaaggatggagatgtggttacatttggtactggaattgca
caatataggttttcctatgttcccctcatcctttgcgcgtcgtcatccaagccttcagag
atgaataaacttaaaaccaagatgttgacaatcggtgccagtgtcactcaagcttggact
tctaaatgcacgcatatggttattgatgacttcaaccctatcaatgatgaaattatcaat
tcgattgtggctagaaaaccccttgtccgatttagctggatagaggtagttgcaggaaaa
acattttccactgagattcccagccgtctctcgcatgctccgaccttgatactggaaggt
gcatctctcaaagtcgccgactcacaatctcgagaacagtgtttggaaggatacactttt
atgttggactccaagcacaagtataaatttaaggagaagatgtgtatgcttttggaagct
ggtggtgcaaaagttgtttacgctgaaactttagatcaatgcagtcagaataccagagag
aatctggtgtgcgtgatgccagctggaatgacgagcagcagtggaaatttcaaaaaattc
agttatctgcctacggtgaatgagatggaactgatttcagccgttgtttctggacatcta
gatccttcagttatggcatcagcacctgtgctggtcacatcttcatgctccacagatgtg
acggtggttgcggattctgatgtagaaatggaaactgccacatcagtacgtacgtctgct
gcagttaatttgatatcttctgctgaagatgaatgcgaaacaaagatggggatccacgag
acagaacgttcagaaagaaattgcaaagcagaaaatgttgttcatgtgatagaatctacg
gaacacgacagtgtagcaaaaacagaggctggagcaacagatcctgggagcccaggattc
ttacattctaaaggggaagcccttaagcttgacacaccttattggagttctatatcaagg
gacagagatgaacatatgacgaggaatgatgaggggcatccatcggatagtgagaatgtg
gatataatatacagcgagtctctaattgttcgagagtctaactcagtacaattcgatcat
tctgcaagaaatggcgcagctgctaacttcaaacgttttaggaagatgagtgttccatca
gggaacagcttcagcaaccttattccgttttcagagtatccatacaaagattctgactat
ggaaacgaagatgtggctgagtccatcaaagaggagaagaagcgcaagcagatggaggcc
attgcagatgacttatttaacaacgacaagggaagacgacgtgcatctggtacccttcct
tcgctctttgctcgtcgttga
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