Salvia splendens (scarlet sage): 121785835
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Entry
121785835 CDS
T07627
Name
(RefSeq) putative transcription elongation factor SPT5 homolog 1
KO
K15172
transcription elongation factor SPT5
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
121785835
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sspl03021
]
121785835
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121785835
Transcription machinery [BR:
sspl03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
121785835
RNA polymerase I system
121785835
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
121785835
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW1_SPT5
Spt5-NGN
KOW6_SPT51-2
KOW4_SPT5
KOW2_Spt5
KOW7_SPT5
KOW
KOW5_SPT5
KOWx_SPT5
Spt5_N
GPKOW_C
DUF150_C
DUF4438
Motif
Other DBs
NCBI-GeneID:
121785835
NCBI-ProteinID:
XP_042040232
LinkDB
All DBs
Position
2:complement(6628933..6636418)
Genome browser
AA seq
1040 aa
AA seq
DB search
MSRRRDEYEDDVEEDDEYDGVDEEDDEADGYDDGGKVKRKRTTSDFIYDEADEDEDEEED
DDDEDYGGGGGARRRGGGGGKRHKGASNFFDLEAQVDSDEEEEEEEGDDDFIDPGADIPD
EDDRRLHRRPLLPREDEQEDVEEIERRIQERYARSLNVEYDEEATDVEQQALLPSVRDPK
LWMVKCAIGREREVAVCLMQKCIDRGPELQIRSAVALDHLKNFIYIEADKEAHVKEAIKG
MRNIFTGKIMLVPIKEMTDVLSVESKAIDISRDTWVRLKIGTYKGDLAKVVDVDNVRQRA
TVKVIPRIDLQALSNKLEGREVPKKKAFTPPARFMNIDEARELHIRVERRRDPATGDYFE
KIEGMMFKDGFLYKNVSLKSLSTQNVQPTFDELEKFRQPGETGDGDMSSLSTLFANRKKG
HFMKGDRVIVVKGDLRNLKGWVEKVEEDTVHIKPNEKGLPKTLAISDKDLCKYFEPGNHV
KVVSGATEGATGMVVSVEGHVVNLVSDTTKELIRVFADNVVESSEVTSGVTKIGDYELHD
LVVLDDNSFGVIIRVESEAFQVLKGVPERPDVALARLREIKYKVDKKIFAKDRYKNTLSV
KDVVKILDGPCKGKQGPVEHIYKGVLFIYDRHHLEHAGFICVKSDSCMMVGGSRANGERN
GNSLTSKFSHLRTPPRVPHSPMRPPRGGYGGHNNFGGRGGGRGHDALIGATVKIRLGHYK
GCKGRVKDVKGTTVRIELESQMKVVAVDRSHISDNVNVTPSRETSRYGMGSETPMHPSRT
PLHPYMTPMRDSGVTPYHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQYQPG
SPPSRAYEAPTPGSGWTNTPSNNYNEAGTPRDSGSAYANAPSPYLPSTPGGQPPMTPSSA
YLPGTPGGQPMTPGSGGLDMMSPVVGADSEGPWFLPGILVNVRRPGDDTTPGVIREVLPD
GSSKIALGSSGNGDVVTALPNEIEVVPPRKLDKIKIMGGAHRGATGKLIGIDGTDGIVKV
DDTLDVKILDMVSLAKLVQA
NT seq
3123 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcgccgcagagacgaatacgaggacgacgtcgaagaagacgacgaatacgacggc
gtagacgaagaggatgatgaggccgacggatacgatgatggggggaaggtcaaacggaag
aggactacatcggatttcatctacgacgaagcggacgaagacgaagatgaagaggaggac
gacgacgatgaggattatggcggcggaggcggcgccagaagaagaggaggaggaggaggg
aagcgccacaagggggcctcaaattttttcgatttggaggcgcaggttgattcggatgag
gaagaggaggaagaggaaggggatgacgatttcattgatccaggagccgatatacctgat
gaggatgatagaagattgcatcgtcgtccgctgcttccacgtgaggatgagcaagaggat
gttgaggagattgaaagaagaattcaggaaagatatgcaaggagccttaatgttgaatat
gacgaggaagcaacagatgtagaacagcaagctctactgccttctgttagggatcccaaa
ttatggatggtgaaatgtgcgattggccgtgaaagggaggtggctgtttgtcttatgcag
aagtgcatagatagaggacctgaattgcaaatcagatctgccgtagcacttgatcaccta
aaaaattttatatacatagaggcagataaagaggctcatgtgaaggaggctattaagggt
atgcgcaatatatttacgggtaaaataatgcttgtcccaatcaaggagatgacagatgtt
ctgtcagttgaaagcaaagcaattgatatttctagggatacctgggtcagattgaagatt
ggtacttataaaggggatcttgcgaaggttgttgatgtggacaatgtgcggcagagagcc
actgtgaaagtaattcctaggattgatttgcaggccctgtctaacaaattggaagggagg
gaagtccccaagaagaaggcatttactcctcctgcacggtttatgaatattgatgaagct
agagagcttcatatacgagttgaacgtagaagagatccagctactggtgattattttgaa
aaaattgaagggatgatgttcaaggacggtttcttgtataaaaatgtctcattaaaatca
ctcagcactcagaatgttcaaccaacctttgatgaactcgaaaaatttaggcaacctggt
gaaactggggatggggacatgtcaagtttgtctacactatttgcaaacagaaagaaaggt
cattttatgaagggtgatagggttatagttgtcaagggagatcttagaaacttgaaagga
tgggtggagaaggtcgaggaagatactgttcatattaaaccaaatgaaaagggccttccg
aaaaccctggctattagcgacaaagacctttgtaagtactttgaacctggaaaccatgta
aaggtcgtgtctggtgctacagagggtgcaaccggtatggttgtctcagttgaaggtcat
gtggtgaacttagtctcagacacaacaaaggaacttatacgtgtctttgcggacaatgtt
gtggagagctctgaagtaacatctggtgtaactaagattggtgattatgagctccatgat
cttgtggtgctcgatgacaatagttttggtgttattatacgagtcgagagtgaagccttt
caggttcttaagggtgttccagagagacctgatgtcgctcttgcgaggttaagagagatt
aaatacaaggttgacaagaagatttttgctaaagatcggtacaagaatacactgtctgtg
aaagacgttgttaaaattcttgatggtccgtgtaagggaaaacagggtccagttgaacat
atctacaaaggagttttgtttatttatgatcggcatcaccttgagcatgctggttttatt
tgcgtaaaatcggactcttgtatgatggttggtggatcacgggcgaatggtgaaaggaat
ggcaattccttgacatcaaaattttcgcatctgagaactccaccacgtgttccccactcc
cccatgagaccacctagaggtggttatggtggtcataacaatttcggaggaagaggaggt
ggaagaggccatgatgctttaataggagccactgtgaaaattcgtcttggccattataaa
ggttgcaagggacgtgttaaagatgtcaaaggtaccactgttcggattgaattagaatct
cagatgaaggttgttgcagttgatcgtagtcatatttcggataatgtcaatgttacgcca
tccagggaaacttccaggtatggtatgggaagtgagaccccgatgcatccttctcgcact
cctctgcatccatatatgactcctatgagggactctggagtaactccttaccatgatggt
atgaggacacctatgcgtgaccgagcatggaatccgtacacaccaatgagtccaccaagg
gacaattgggaagatggaaatcctggttcttggggcacaagtccacaatatcagccagga
agtcctccttcacgagcatatgaagcacctacacctggttctggttggacaaatacccca
agtaacaattacaatgaggcaggcacaccgagagatagcggatctgcttatgcaaatgct
ccaagtccttacttgccctccactcctggtggacaacctccaatgactccaagttctgca
tatttacctgggacacctggtgggcagccgatgacacctggaagtggtggcttggatatg
atgtcgcctgtcgtaggtgcagatagtgaagggccttggttcctacccggtattttggtc
aatgttcggaggcctggtgatgacactactccaggagttataagagaagtgcttccggat
ggctcgtctaagatagctcttggatcaagcggtaatggtgatgtggtgactgcccttccc
aatgaaattgaggtagtgccaccaaggaagttggacaagattaagatcatgggaggtgcg
caccgtggggcgaccgggaagcttattggtattgacggtactgatggaatcgtgaaagtt
gacgacacactggacgtcaagatcttagacatggtatcattggcgaaactagttcaagcg
tga
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