Salvia splendens (scarlet sage): 121787092
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Entry
121787092 CDS
T07627
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit B-like
KO
K07466
replication factor A1
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03030
DNA replication
sspl03420
Nucleotide excision repair
sspl03430
Mismatch repair
sspl03440
Homologous recombination
sspl03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
121787092
03420 Nucleotide excision repair
121787092
03430 Mismatch repair
121787092
03440 Homologous recombination
121787092
03460 Fanconi anemia pathway
121787092
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sspl03000
]
121787092
03032 DNA replication proteins [BR:
sspl03032
]
121787092
03400 DNA repair and recombination proteins [BR:
sspl03400
]
121787092
Transcription factors [BR:
sspl03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
121787092
DNA replication proteins [BR:
sspl03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
121787092
DNA repair and recombination proteins [BR:
sspl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
121787092
MMR (mismatch excision repair)
121787092
DSBR (double strand breaks repair)
HR (homologous recombination)
121787092
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
DUF223
tRNA_anti-codon
RMI1_C
Rhabdo_glycop_CD
SH3_Rv0428c
Motif
Other DBs
NCBI-GeneID:
121787092
NCBI-ProteinID:
XP_042041647
LinkDB
All DBs
Position
22:complement(21151611..21154896)
Genome browser
AA seq
624 aa
AA seq
DB search
MAKTVSPNSVSVILANPCPDSSSDFPEIVVQVLDLKATGNKYMFMASDGKMKVRALLQST
LASEVTSGKIQNLGLIRVLDYTLNDIPTKNEKFLIVSKCDAVSPALEAEYKDEVKVEGSG
TDLKPNQVMDVDVKTEYAGIALKPKQEVMAKSAAQIVPDQRGNMAPAARMSMTRRVHPLA
SLNPYQGNWTIKVRVTGKGNMRTYRNARGEGCVFNVELTDEDGTQIQATMFNDAAKKFFD
TFQMGKVYFISKGTLKLANKQFKTVENDYEMTLNENSEVEEDNNEATFLPETKFSFTPID
ELGPYVNGRELVDVIGVVQSVSPTVSIRRKSNNETIPKRDIVIADETKKTVVVSLWNDLA
TSFGQELLDMANKSPVVAMKSLKVGEFQGVSLSALSKSIMVVDPDMPEAKKLRFWYDSEG
KDTSLAAIGQSPSNRNGARSMYSDRVSLSHITSNPSLGEDKPAYFSIKAYISAIKPDQAM
WYRACKTCSKKVTEAVGSGYWCEGCQKNEDVCSLRYIMAVKVSDASGEAFISVFNDQADK
MIGCTADELNEIKLHDGEASYQKKLKEATWVPHLFRVSVTTNEYNNEKRQRITARAVAPI
DYATESKYLVEDMTKIKLSKNLLN
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atggctaaaacagtaagcccaaattctgtatcagttattctagcaaatccatgcccagat
tcttcctccgatttcccggaaatcgttgtacaagtccttgatctcaaggccaccggcaac
aaatacatgtttatggcgagtgatggcaaaatgaaggtgagggctttgttgcagtcaact
ctagcgtctgaagtgacatctgggaagatccagaatttggggctcattcgtgttcttgac
tacactctcaatgatatcccaacaaagaacgaaaagttcttgattgtgtccaagtgtgat
gctgtgtcgcctgcgcttgaggctgagtataaggacgaggtgaaggttgagggtagtggg
actgatttgaaaccgaaccaggtaatggatgttgatgtgaaaactgaatatgctggtatt
gcgttgaaaccaaaacaggaagttatggctaaatctgctgctcaaattgttcctgatcag
cgtgggaatatggcgccagctgcacgaatgtcaatgacacgtcgagtccatccacttgct
tctttgaatccttatcaaggaaattggaccattaaagtccgggttacagggaagggaaac
atgcggacttacaggaatgctaggggagaaggctgcgtattcaacgtagagttgacagat
gaagatggcactcaaatacaagcaacgatgtttaatgatgctgcaaagaaattctttgat
acgtttcagatggggaaggtttacttcatatcgaagggaaccttgaagttagcaaacaag
caattcaaaactgtagaaaatgattatgagatgacgttaaatgaaaattcggaagtggag
gaagacaacaatgaggcaacctttcttcctgaaacaaaattcagttttaccccaattgat
gagttaggtccatatgtcaatggaagggagctagttgatgttattggcgtggttcagagt
gtgtctcctacagtgagtattagaaggaagagcaacaatgagactatcccaaagcgtgat
atagtcattgctgatgagactaagaaaactgtggtggtgtctctgtggaacgatcttgcc
acgagctttgggcaagaacttcttgatatggctaataaatctcctgtagtcgctatgaaa
tctcttaaagttggtgaatttcaaggtgtatcattatcagcactgagtaaaagcattatg
gtagtcgaccctgacatgccagaggccaaaaagttgagattttggtatgattctgaaggc
aaagatacttctttggctgctattgggcaaagcccgtccaacagaaatggagctcgttcc
atgtactctgacagagtttccttatctcatatcaccagtaacccttccttgggagaggac
aagcctgcatacttctccatcaaagcatacatcagtgccatcaaacccgatcaagcaatg
tggtaccgtgcttgcaagacatgcagcaagaaggttactgaagctgtagggtccggctat
tggtgcgaagggtgccagaagaatgaagatgtctgcagtttgagatacataatggcagta
aaggtctctgatgcaagtggtgaagcgtttatctcagttttcaatgatcaagcggataaa
atgattggatgcacggctgatgaactaaacgagataaaacttcatgatggagaagctagt
tatcaaaagaaattaaaggaggcaacatgggttcctcaccttttccgcgtcagtgtcact
acgaatgagtacaacaatgagaagagacagaggataacagccagggctgttgctccaatt
gattatgcaactgaatccaagtatctggttgaagatatgacaaagatcaaactatctaag
aatctgcttaattga
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