Salvia splendens (scarlet sage): 121787228
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Entry
121787228 CDS
T07627
Name
(RefSeq) general negative regulator of transcription subunit 3-like isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121787228
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121787228
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121787228
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
121787228
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
Motif
Other DBs
NCBI-GeneID:
121787228
NCBI-ProteinID:
XP_042041839
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All DBs
Position
22:17442529..17454707
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AA seq
868 aa
AA seq
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MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALMDARKQIEREMERFKICEKETKTKAFSKEGLGLQPK
TDPKEKAKSETRDWLNNVVSELENQIDSFEAEIEGLTVKKGKTRPVRLTHLEESITRHKA
HIMKLELILRLLDNDELSPEEVNDVKDFLDDYVERNQEDFDEFSDVDELYSSLPLDKVES
LEDLVTGPPSLVKGVTASSAVITLKTSLAATPVQTSATTPATIQQVTSTLDLLDETVFQD
DAVARTPPSKGSGLNSPAPQTPPAGLATSGITSVVGVSSPVAVPSATKEEDITNFPGRRS
SPALAETGLRALGRGGLPGQPASNILPSSGNTISSNGALGAVPLLSEMGKRNILGSDDRP
GSSDMVQALASPLSNRTVMPQTAKSSDGLGSSDPGSVIDSAVGGSRVFSSPVVPGMQWRP
GNSFQNQNEPFRGRTEIAPDQREKYIQRFQQVQLHGQNNLLGMPSISGGKQYSAQQQNIL
LQQFNAQSSSITPQLGLGVGVQASGINSVTTSASLQPQPSAIHQPANQQTIISSTPKDAE
NVLNKVEEMQQQQSLTEDSSADSAVNSGLGKTLVAEDELKSPYALDAAQAAVASGSIAEP
SQVIREIDLSPGQPLQSASSSGSLGVIGRRSVSDLGIIGDNISASTPISGGMHDQSYNLQ
MLEAAYYRLPQPKDSERAKTYTPRHPAATPSSYPQVQAPIVNNPAFWERLGADTYGTDTL
FFSFYYQQNTYQQYLAARELKKQSWRYHRKYNTWFQRHEEPKVATDDFEQGTYVYFDFHI
ASDEHGWCQRIKTEFTFEYSYLEDDLII
NT seq
2607 nt
NT seq
+upstream
nt +downstream
nt
atgggagcaagcaggaaattacagggcgagatcgatcgggttctgaagaaggttcaagaa
ggtgtcgacgtgttcgacagcatttggaacaaggtttatgatacagacaatgcgaatcag
aaggaaaaattcgaggccgacttgaaaaaggagattaaaaagttgcagaggtatagagac
cagatcaagacatggattcagtccagcgagatcaaggataagaaggttagtgcctcttat
gagcaggctctgatggatgctcgaaagcaaattgagcgtgaaatggaacgatttaagata
tgtgaaaaagaaacaaaaacaaaagcattctcaaaagaaggtcttggcctacaacctaag
acggatccaaaggaaaaagctaaatctgagacgagagattggttgaataacgtggtcagt
gagctggaaaatcaaattgatagttttgaagctgaaatagaaggacttacagttaagaaa
gggaagacaaggccagtgagactgacacatctggaggaatccatcactcggcataaggct
catattatgaagctggaattaattctaaggctcttggataatgatgaattgagtccggag
gaagtcaacgacgtgaaggatttcttggatgactatgttgaaagaaatcaggaagacttt
gacgagtttagcgatgttgatgagctttacagttccttacctctagacaaggtggagtct
cttgaagatctagttacaggtcctcctagtcttgttaagggagttactgcttccagtgca
gtcataacattgaaaacttctctggctgcaacacctgttcaaacttcagcaacaacccca
gctaccatccaacaggttacttccaccctcgacctgcttgatgaaacagtttttcaggat
gatgcagttgctagaaccccaccttctaaaggtagtggcctcaactctcctgcaccacaa
acaccaccagcaggtcttgcaacttctggcatcacaagtgttgtcggtgtgtcatctcct
gtggccgtgccaagtgctacaaaagaagaggatattacgaatttccctggccgtagatca
tctccagcacttgctgaaactggattaagggctcttggcagaggtgggttgcctggtcaa
ccagcttctaacatccttcctagttctggcaacacgatttccagcaatggagcccttggt
gccgttcccttgttatctgaaatggggaaaagaaatatcttgggatctgatgatcgacct
gggagtagtgacatggtgcaggctcttgcatctcctttaagtaatcgcacagttatgccc
caaactgcaaaatcaagtgatgggcttggatcatctgatcccggaagtgttattgattct
gcagttgggggcagcagagttttcagttctcctgttgttcctggtatgcaatggcggccc
ggaaattccttccaaaaccagaacgaaccatttcgtggaagaactgagattgcacctgat
caaagggagaagtatatacaacgatttcagcaggtacagctgcatggccagaataatctt
ctgggcatgccttctatttctggaggaaagcagtactctgcacaacagcaaaacattctc
ttacaacagttcaatgctcaaagctcatccatcacacctcaactagggttgggggttggg
gtccaggcttcaggtattaacagtgtaacaacatctgcttcactgcagccacagcctagt
gcaatccaccaacctgctaatcagcagacaatcatatcttcaacacctaaggatgcagaa
aatgtccttaacaaagttgaggaaatgcagcagcaacagtccctcacggaagattcttct
gcagattctgctgtcaactctgggctaggaaaaactcttgttgcagaggatgaactgaaa
tctccttacgctttagatgctgcacaggctgcagttgcctctggttctattgctgagcct
tctcaagtaatacgggagatagatctatctccaggacagcctttacaatcagcttcatct
tctggaagtctcggtgttattggtcgaagaagtgtgtctgaccttggtattattggggat
aacattagtgcatcaactccaatttctgggggaatgcatgatcagtcgtataatttgcag
atgcttgaggctgcttattatagacttcctcagcccaaggattcagaacgtgctaagacc
tatactccaagacatcctgctgcaactccttcgagctatcctcaagtacaagcccctatt
gttaataatcctgccttttgggaacgtcttggtgcagatacttatggcactgataccctg
ttcttctcattttactaccagcagaatacctatcagcaatacttggctgctagggaacta
aaaaaacaatcttggagataccacaggaaatacaacacatggttccaacggcatgaggag
ccaaaagttgctacagatgattttgaacaggggacatatgtgtattttgacttccatatt
gccagtgatgaacatggatggtgtcaaagaattaagacggagttcactttcgagtacagt
tatctagaggatgatttaataatatag
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