Salvia splendens (scarlet sage): 121787317
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Entry
121787317 CDS
T07627
Name
(RefSeq) protein STABILIZED1-like
KO
K12855
pre-mRNA-processing factor 6
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121787317
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sspl03041
]
121787317
Spliceosome [BR:
sspl03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
121787317
Complex C
U5 SnRNP specific factors
121787317
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP1_N
TPR_14
HAT_PRP39_N
Suf
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
TPR_19
HAT_Syf1_CNRKL1_C
TPR_16
TPR_CcmH_CycH
TPR_2
TPR_17
FAT
ubiquitin
PAP_PilO
PMC2NT
Motif
Other DBs
NCBI-GeneID:
121787317
NCBI-ProteinID:
XP_042041947
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All DBs
Position
22:complement(4353969..4357581)
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AA seq
1024 aa
AA seq
DB search
MVYVQSPFNKTLTVNLNPSTATLRDLHLHLHRHHLIPISYQRLYLSPRLLSTEENDAVFL
SDLGVSPNSTLTLHVPLLGGMQAPVAPKARTDFLNTKPPPNYVAGLGRGATGFTTRSDIG
PARAAPDLPDRSAAAIGAPGAPGVGRGRGKGAGEEEEEEEAEEKGYDENQKFDEFEGNDA
GLFASAEYDDEDKEADAVWEAIDNRMDSRRKDRREARLKEEIEKYRASNPKITEQFADLK
RKLYTLSTDEWDSIPEIGDYSQRNKKKRFESFVPVPDTLLEKARQEKEHVSALDPKSRAA
GGTETPWAQTPVTDLTAVGEGRGTVLSLKLDRLSDSVSGLTVVDPKGYLTDLKSMKITSD
AEVSDINKARLLLKSVTQTNPKHPHGWIAAARLEEVAGKLQAAQNLIRKGCEECPKSEDV
WLEACRLASHVDAKAVIARGVKAIPNSVKLWMQAAKLELEDVNKSRVLRKGLEHIPDSVR
LWKAVVELANEEDARLLLQRAVECCPLHVELWLALARLETYDNAKKVLNKAREKLSKEPA
IWITAAKLEEANGNTSMVGKIIERGIRALQREGVEIDREMWMKEAEAAERAGSVATCQAI
IHNTVEVGVEEEDRKRTWVADAEECKKRGSIETARAIYAHALTVFLTKKSIWLKAAQLEK
SLGTRESLDALLRKAVTYIPHAEVLWLMGAKEKWLAGDVPAARAILQEAYAAIPNSEEIW
LAAFKLEFENHEPERARMLLAKARERGGTERVWMKSAIVERELGNIAEERRLLDEGLKQF
PSFFKLWLILGQLEERLANLDRAKDAYELGLKHCPKCISLWLSLAHLEEKVNALSKARAV
LTMARKKNPQTPELWLAAVRAESRHGHKKEAEILMAKALQECATSGILWAASIEMAPRPQ
QKTKSRDAYKKCGDDPHVLAAVGKIFWHDRKVDKARTWFNRAVTLAPDIGDFWALYYKFE
LQHGEEDNQRDVLNRCVTADPKHGEKWQGISKAVENSHQPTEFILKKVVVAIGKEDHVAE
NGKN
NT seq
3075 nt
NT seq
+upstream
nt +downstream
nt
atggtgtatgtccaatcccccttcaacaaaaccctaaccgtcaatctcaatccttcaacc
gccactctgcgggaccttcacctccatctccatcgccaccacctcatcccaatttcctac
cagcgcctctacctctcgccgcgcctcctctccaccgaagaaaacgacgccgttttcctg
tccgatttgggggtttccccaaattcaaccctaaccctacacgtccctctcctcggcggt
atgcaagcgcccgtggctccaaaagccaggaccgacttcctcaacacgaagccacctccg
aattacgttgccgggctgggccgtggcgccaccggtttcaccacccggtctgatatcggt
cctgcccgcgctgcgcctgacttgcctgacagatccgccgcggcgatcggcgcgcctggg
gcgcctggcgttggccgcggccgtgggaaaggagctggtgaagaggaagaggaggaggag
gctgaggaaaagggatatgacgagaatcagaaatttgatgaattcgaagggaatgatgct
ggattgtttgcttctgcggagtatgacgatgaggataaggaagctgatgctgtttgggag
gcgattgataataggatggattcgcggaggaaagatagaagggaggcgaggttgaaggag
gagattgagaagtatcgtgcctcgaatccgaagatcactgagcagtttgctgatttaaag
aggaaattgtacacattatcgaccgatgagtgggatagcataccagagatcggggattat
tctcagaggaacaagaagaagagatttgaaagtttcgttccggtaccggacacgctgttg
gagaaggcaaggcaggaaaaggagcatgtgagtgctttggacccgaagagcagggcggct
ggtgggactgaaacgccatgggcacagactccggttacagatttgactgctgtcggtgaa
gggagaggaactgtgttgtcattgaagctcgataggttgtctgattcagtctctggattg
actgtggtggatcctaaaggttacttgacagatttgaagagtatgaagatcactagcgat
gcagaggtgtctgatataaacaaggcccgattgctgctgaaatcagtaacgcagacgaat
ccgaagcaccctcatggctggattgcagcggctaggttagaagaggtggccgggaagctt
caggctgctcagaatttgattaggaaagggtgcgaagaatgccctaaaagcgaggatgtg
tggttggaggcatgccgtttggcgtctcatgttgatgcgaaggctgtgattgcaagaggt
gtgaaggcgattcctaattcagtgaagttatggatgcaagcagcgaagcttgagttggag
gatgtgaataagagtagagtgctgaggaaagggcttgagcatataccagactccgtgagg
ctttggaaggcggttgttgagctagctaatgaggaagatgcgaggcttttgttgcagagg
gctgtagaatgctgcccgttgcacgttgagctgtggttggcacttgctaggctagaaact
tacgataatgcaaagaaagtgctgaataaagcgagggagaagctttcaaaggagcctgct
atatggatcactgctgccaagctggaagaagctaatgggaatactagcatggttgggaag
attatcgagaggggtattcgagctttgcagagggaaggcgttgagatcgacagagaaatg
tggatgaaagaggccgaggcagctgaaagagctggttctgttgctacctgtcaagctata
atccacaacacggtcgaggttggggtggaagaagaagataggaagagaacttgggttgct
gatgcagaggagtgcaagaagagaggctcgattgagacggcgagggccatctatgcccat
gctttaaccgtgtttttaacaaagaagagcatatggctgaaggctgctcagcttgagaag
agccttggcactcgggaatctctcgatgctctgctccggaaggctgttacttacatacca
catgctgaagttttgtggctcatgggtgccaaggagaaatggcttgctggggatgtgcct
gcagctcgggcgattcttcaagaagcatatgctgcaattccaaactccgaggagatttgg
cttgctgcattcaagcttgagtttgagaatcatgagccagagagggcgaggatgcttctt
gcaaaggcccgagagaggggaggaacggagagagtgtggatgaagtctgccattgttgag
agagaactggggaacattgcagaggagaggaggttgcttgatgaagggctgaagcaattt
ccttcgtttttcaagctctggttgatactggggcagttggaggagcgtctggcgaacttg
gatcgagccaaggatgcgtacgagctggggttgaagcattgcccgaagtgtatttctcta
tggctctcacttgctcacttggaggagaaggtgaatgcattaagcaaagcccgcgctgtt
ctgacaatggctaggaagaaaaaccctcaaacgcccgagctttggcttgctgcagtgaga
gctgagtctcgacatggtcacaagaaggaagctgaaatattgatggcgaaggcgttgcaa
gaatgcgcaaccagtggtatcctctgggctgcttcaatagagatggctcctcggcctcaa
cagaagacaaagagcagggatgcgtacaagaaatgtggcgacgaccctcatgtgcttgct
gctgtggggaagatattttggcatgataggaaggttgacaaggctaggacatggtttaat
agggctgtgacacttgctccggatattggggatttctgggcgctgtactacaaattcgag
ctccagcatggtgaggaggataaccagagggatgtgctgaacaggtgcgttactgcagac
ccgaagcacggagagaagtggcaggggatatcgaaggccgtggagaattcccatcagcct
acggagttcatcttgaaaaaggtggtggttgctatagggaaagaagatcatgttgctgaa
aatggcaaaaactag
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integrated database retrieval system
