Salvia splendens (scarlet sage): 121787410
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Entry
121787410 CDS
T07627
Name
(RefSeq) histone-lysine N-methyltransferase SETD1B-like
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03013
Nucleocytoplasmic transport
sspl03015
mRNA surveillance pathway
sspl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121787410
09122 Translation
03013 Nucleocytoplasmic transport
121787410
03015 mRNA surveillance pathway
121787410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121787410
03041 Spliceosome [BR:
sspl03041
]
121787410
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
121787410
Spliceosome [BR:
sspl03041
]
Complex C
Other components
EJC/TREX
121787410
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
Motif
Other DBs
NCBI-GeneID:
121787410
NCBI-ProteinID:
XP_042042054
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All DBs
Position
22:2171239..2175358
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AA seq
694 aa
AA seq
DB search
MSSPYVKIGNRTVDQLKVTELREELKSRRLTSSGLKQDLVKRLDEALRIEMQSLEKAEEE
PTQPEVPIEKENAVTDVNDSAKAFTGRDIDIVEKIDDSRGSSGEGKVIETGLVQGTEFAG
LEGGQVPDPSFVDTTEVVKITEPVKISEESNSQDHGIIEGGDATVLPNVDGSLQEDAKVE
LSAPNTNEGIHSTEQRENDDSSCLQPGSSVQTLKYQVSAVDPSLGFQVTSDSVSTESVSI
IEKNELKIDVINDNVKLELDVKPGVVQQSPSIAVPDGGESHPTDVEEPLDKTNVKVDLDI
KDVKEPLDKNDDKVDLDIKDVEELHDVKSIDSGDVDPPEKLSLDRSSGDDSMEEDIMESK
QMDGKSDSFTENVENSGTPSVKEEDHVDVVGHDKPVEMETASVPTSMKRKFQDKEAIGNN
DAGKKVRRWNTEGLKSSEPQSGSITPKGSSEPSFKPITGANSLANVEEAPKERVVPPSSK
PPTNSLRIDRFLRPFTLKAVQELLGKTGTVTSFWMDHIKTHCFVSYSSVEEALETRNAVY
NLQWPTNGGRLLVAEFVDPQEVKSRMEAPLVSPAAPSPTTVPTQSPSVAQPSPRQQLMKQ
QIPPPLPPPPLSNPPPLVREQLHPPREQPLPARDRLNLPPPPPLPVAEKVVDPPIVTLDD
LFRKTKAAPRIYYLPLSDEVVASKLKTQGKNVTQ
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcgccatatgttaaaattggcaatcgaacagttgatcagttgaaggtcactgag
ctgagggaagagctcaagagtcgtagattgactagtagtgggttgaaacaagatctggtg
aaacgtctggatgaagcacttcgtattgaaatgcaaagtttggagaaagcagaagaggaa
cctacacagcctgaggttcctattgaaaaagaaaatgcagtgactgatgttaatgatagt
gctaaggcttttacggggagagatattgacattgtcgaaaagatagatgactccagaggg
tcatcaggtgaaggcaaagtcattgaaacaggcttggtgcagggaaccgagtttgctggg
ctggaaggtggacaggttcctgatccctcttttgtggatactactgaagttgtaaagata
actgaacctgtgaagatttcagaagaatcaaactcacaagatcatggaataattgaggga
ggagatgctactgtattgcctaatgttgatggatctctgcaggaggatgcgaaggttgaa
ctctcagctcctaatactaatgaaggtattcactcaacggagcagagggaaaatgatgat
tccagttgtctccaaccaggttccagtgtccagacactgaagtatcaggtatctgcggtt
gaccctagtttagggtttcaagtaacatctgattctgtttctactgaatctgtctccatt
attgagaaaaatgaactaaagattgatgtaattaatgataatgtcaaattagaactagat
gttaagcctggggtggtgcagcagtctcccagcatcgctgtccctgatggtggtgaatca
catccaacggatgttgaagagccacttgacaaaactaatgtgaaagttgatcttgacata
aaagatgttaaagagccacttgacaaaaatgatgacaaagttgaccttgacataaaagat
gttgaagaacttcatgatgtcaagagcattgatagtggggatgtagatccccctgaaaaa
ctaagtttagatcggagttctggcgatgattcaatggaagaggatataatggagagtaaa
cagatggatggcaagtctgattcatttactgaaaatgtggagaactctggaacacctagt
gtgaaagaggaggatcatgtggacgtggttggtcatgataagcctgttgaaatggagaca
gcttctgtcccgacctccatgaaaagaaaatttcaagacaaagaagccattggcaataat
gatgctgggaagaaggtgcgcaggtggaacactgaaggtttaaagagttcagagccacag
agtggttctataacacctaaaggttcatctgaacctagttttaagcccataacaggtgcc
aactccttagctaatgtagaggaggctcccaaggagcgtgtggttccaccatcatcaaag
ccaccgactaattctctcagaattgatcgttttctgcgcccttttactttgaaagctgtc
caagaacttctaggaaagactggaactgttaccagtttctggatggatcacatcaaaacc
cactgttttgtctcatactcatctgttgaagaggctttagaaacccgtaatgctgtatac
aatctccagtggcctacaaacggggggcgcctcttggttgcggagtttgttgaccctcaa
gaagtcaaatcacgcatggaggctccacttgtatcacctgcagctccctcaccaactaca
gttccaactcaatccccatcggtcgcacaaccttccccacgacagcaattaatgaagcag
cagataccacctcctcttcctccaccaccactatccaatccaccacccctagtcagggaa
cagctgcatccaccaagggaacagcctctcccggcaagggacaggctgaacctcccacct
ccacctccgcttccagttgcggagaaggttgttgatccaccaattgtcactctggatgac
ctatttcggaaaaccaaggccgcaccacgcatctactacctgccgttgtctgatgaagta
gttgcatcaaagctgaagacccaggggaagaatgttactcagtag
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