Salvia splendens (scarlet sage): 121787462
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Entry
121787462 CDS
T07627
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121787462
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121787462
03012 Translation factors [BR:
sspl03012
]
121787462
Enzymes [BR:
sspl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121787462
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
121787462
Translation factors [BR:
sspl03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
121787462
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
nSTAND3
T2SSE
NPHP3_N
AAA_19
FoP_duplication
Motif
Other DBs
NCBI-GeneID:
121787462
NCBI-ProteinID:
XP_042042125
LinkDB
All DBs
Position
22:23091700..23100019
Genome browser
AA seq
1040 aa
AA seq
DB search
MSGRLFPNPFRHNHRLFTLTPLSISLAAPPPLLGNPEIKLARISNCTSMYRPNAQGGRRG
GRGGGGRGGGGAGRGGGRGGRGEQRWWDPVWRAERLRQMSAEKETMDPNEWCRKIEQMKT
GNEQEMVIRQKFSKDDQQILANMAQQLGLYFHAYNKGKALVVSKVPLPNYRADLDEKHGS
TKNEISMSTETEARVGFLLRSSYVAKVVQNMSSSSSGSATSQSKPAEMEREAPLPYIDTD
FERLSIELKQKQEKMREGDSVKAMLAFREKLPAFKVKSEFLKAVTNNQVLVVSGETGCGK
TTQLPQFILEEEIASLRGGSCNIICTQPRRISAISVAARISAERGEKLGETVGYQIRLES
KRSAQTKLLFCTTGVLLRQLIQDPDLTGITHLLVDEIHERGMNEDFLLIILRDILPRRPN
LRVILMSATINAELFSKYFGNAPTIHIPGLTFPVNELYLEDVLEKTRYTVQPESGNLPRN
SRRGSQQQESKKDPLTELFEDADIDVLYKSFSASTRQSLDAWSGSQLDLGLVEATIEHIC
RHEGDGAILVFLTGWDDISKLLDKLRVNIFVGDPNKFLVIPLHGSMPTVNQREIFDRPPP
NVRKIVLATNIAESSITIDDVVYVIDCGKAKETSYDALNKLACLLPSWISKASAHQRRGR
AGRVQPGVCYRLYPKLIHDAMPQYQLPEMLRTPLQELCLHIKSLQLGEVSTFLSKAIQPP
DPLSVENAIELLKTIGALDDREELTPLGHHLSTLPLDPNIGKMLLMGSIFQCLDPALTIA
AALAYRSPFVLPLSRKDEAEAAKRSFAGDSRSDHIALLKAYHGWKDAKRYRNEKSFCWDN
FLSPVTMQMIEDMRFQFLDLLAGVGFVNKSQANAYNQYSYDLEMICAILCAGLYPNIVQC
KRRGKRTAFYTKEVGKVDIHPGSVNAGIFMFPLPYLVYSEKVKTSSIYIRDSTNISDYAL
LMFGGNLLPSQSGDGIEMLGGYLHFSASKTVLDLIRRLRGELDGLLTRKIKEPALDITVE
GRGVVTALMELLHSQNVRIR
NT seq
3123 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggccgtctatttcccaaccccttccgccataaccaccgcctattcacgctcact
cctctctcaatctcactcgccgctccccctccgctgctcggaaatccagaaatcaagcta
gctcggatctcgaattgcacttctatgtaccgccctaacgcacaaggcggtcgtcgcggc
ggtcgcggcggcggcggccgtggaggcggcggagctggcagaggtggaggccgtggaggc
cgaggcgagcagcgatggtgggatcctgtctggagagctgagcgtttgcgccaaatgtcc
gctgagaaagagacaatggatccgaatgaatggtgtagaaaaatagaacagatgaagact
ggaaatgagcaggagatggtaataaggcaaaagtttagtaaagatgatcagcaaatcctg
gctaatatggctcaacaattgggtctatactttcatgcttataataaaggaaaggccctt
gttgtgagcaaagtcccgttgcccaattatcgtgcagatcttgatgaaaagcacggttcc
actaagaatgagatatcaatgtccaccgagaccgaagcaagagttggatttctgctaaga
agctcctatgtggcaaaagtagtacaaaacatgtcttcatcatcttctgggtctgcgaca
agtcaatccaaacctgctgaaatggagagggaagcaccactaccttacattgatactgac
ttcgagagacttagtattgaattaaaacaaaagcaggaaaaaatgagggaaggtgatagt
gtaaaggcaatgctagcatttagagaaaagcttccagcattcaaagtaaaatcagaattc
ttgaaagctgttacaaataatcaggtgctggttgtctcaggagagactggctgtggtaaa
acaacccagcttcctcaatttattctggaagaggagatagcatctctacgaggtggtagc
tgtaatataatatgcactcaacctcgtagaatctcagcaatatcagtcgcagctcgaata
tctgctgaaagaggtgagaagcttggtgaaactgtaggttatcagattcgccttgaatca
aaacgctcagctcaaacaaaattgcttttttgcacgactggggtgttacttcgacagctg
attcaggacccagatttaacgggaattacccatttgctggttgatgaaattcatgaaaga
ggaatgaatgaggacttccttttaataatattgcgagatatccttcctcgccgtcccaac
ctccgtgttatccttatgagtgccactattaatgccgagctattctccaaatactttgga
aatgctcccactattcacattccaggattaacgtttcctgttaacgaactttatttagaa
gatgtgttggagaagactcgttatactgtccagccagagtctggaaacttaccaagaaat
tcaagaagaggcagtcagcaacaggagtctaaaaaagatcctttgacagaattatttgag
gatgcagatattgatgtgctctacaaatcattcagtgcaagcaccaggcaatctctcgat
gcttggtctggttctcagctggatttgggccttgtggaagcaactattgagcatatctgt
cgccatgaaggtgatggagcaattctggtcttccttactggttgggacgatatttccaag
ctccttgataaactcagagttaacatttttgttggagacccaaacaagttcttagttatt
cctcttcatggttcaatgcctacagtcaatcagcgtgaaatttttgatcgcccaccccct
aatgttagaaagattgtgctagcaaccaatattgccgagagtagtattaccatagatgat
gttgtgtatgttatagactgcgggaaggcaaaggagactagttatgatgctcttaataag
ctggcttgtcttttaccttcatggatttccaaggcttcagcacaccagagacgtggtcga
gctggtcgtgtgcagccaggagtttgctacaggttatatcctaagttaattcatgatgct
atgccccagtatcaactgccagaaatgcttcgaacacctttgcaagagctttgtcttcat
atcaagagtttgcagctcggagaagttagtacatttttgtccaaagcaattcagccacct
gatcctctatcagttgaaaatgcaatcgagcttcttaaaacaattggtgctctagatgat
agggaagagctcactccccttggacatcatcttagcacattgcctttggacccaaatatt
ggaaagatgcttctgatgggttccattttccagtgtctcgaccccgcactaacaatagcc
gctgctcttgcttaccgtagcccatttgtccttccattaagtaggaaagatgaggcagaa
gctgcaaaaagatcatttgctggtgattctcgcagtgaccacattgcacttctcaaagca
tatcatgggtggaaagatgcgaaacgatatagaaatgaaaaatctttttgttgggacaat
tttctctcaccagtaactatgcaaatgattgaagatatgagatttcagtttctggactta
ctggccggggttggttttgtgaacaaatcacaagccaatgcatacaatcaatacagttat
gatttagagatgatatgtgcaatactctgtgctggactctacccaaatattgtgcagtgc
aaacggagaggaaagcgaacagctttctacactaaagaagttgggaaagttgacattcat
ccgggatctgtcaatgctggcatttttatgttccctcttccttacttggtttacagtgaa
aaagtaaaaaccagtagcatatacataagagattccaccaacatttcagattatgctctg
ctgatgtttggtggcaatcttctgcctagccaaagtggagatggcattgaaatgcttggt
ggataccttcacttttcagcctcgaagacggtattggacttgattcggaggttgcgcggg
gagctcgatggccttctaacaaggaagattaaggagccggcactcgatatcacggtggag
ggaagaggtgttgtcacagcacttatggaattgttgcacagccaaaatgtgcggattagg
tga
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