Salvia splendens (scarlet sage): 121787707
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Entry
121787707 CDS
T07627
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB1-1-like
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03022
Basal transcription factors
sspl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
121787707
09124 Replication and repair
03420 Nucleotide excision repair
121787707
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sspl03021
]
121787707
03400 DNA repair and recombination proteins [BR:
sspl03400
]
121787707
Transcription machinery [BR:
sspl03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
121787707
DNA repair and recombination proteins [BR:
sspl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
121787707
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
GRAM
DUF1664
SHOCT
Motif
Other DBs
NCBI-GeneID:
121787707
NCBI-ProteinID:
XP_042042457
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All DBs
Position
22:complement(16433483..16447741)
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AA seq
600 aa
AA seq
DB search
MSDKHVIKRAKYKSSTKDPGVPGVLKLSIERFIFMPNDQKSGVKLNVEFKTVKGHKFTKE
GSKQALLNLTQEQGGNYIFEFDSFAERDVCREFVARAIAFYTEGGKAVPERTAPPVTNEQ
LSSIETERRIKLLQENSELQTLHKQFVFGGILTDDEFWATRKKLLDQNDSRRPKQRLALK
NEMWSIKPLSDGQSNRVTFNLTPELIHQIFAEKPAVRQAYLKFVPHKLNEIEFWTKYSRA
QFLHSTRNVVAAAAEGDEDEELAVFLKRDDMLANEARRKIRRVDPTVDIEADEGDDYTHL
PDHGLVRDETKDVLDPRYEPYRRSFSQDLNQHSAVVLQGRVVDAELTEPRDVAEALTRKK
QAELSEDKLNTNFEKELSNRISRSAELEDLQGPQDPAVAPLSIKDPRDYFDSQQANALKA
LGDTGSAAKPLISSANARQAYDSLRNAIIDINEMGLTEPIMNQEVALKVLSGLTQSISST
KFHLGNSSNDSILDMLPKVTKEELLHHWTSVQELLKHFWSSYPLTTKYLYNKVTRLKDAM
SQVYPKLQEIKESVQSDFRHQVSLLVHPMLQALDAAFAHYEADLQRRSAKSGEKRNGFMS
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atgtcggataagcatgtgattaagcgcgccaagtataaatcttccaccaaggaccccggc
gttcctggcgtcctcaaactgagcatagaaagattcatcttcatgccaaatgatcaaaaa
tcgggcgtcaagctaaatgtggagtttaaaacagttaaaggtcacaaattcaccaaggag
ggttccaaacaggccctgcttaatcttacacaggaacagggggggaattacattttcgaa
tttgacagttttgccgagcgcgatgtttgccgggaatttgttgccagggctattgcattc
tatactgaaggtgggaaagcagtaccggaaagaactgctcctccagtaaccaacgagcaa
cttagtagcatagaaacagagcgcagaatcaagctactgcaggaaaatagtgagttacag
acactgcacaagcaatttgtgtttggaggtatactgacagatgatgaattttgggcaaca
aggaagaaattgctagaccagaatgatagcagaagaccaaagcagcgcctagcattaaaa
aatgaaatgtggagcataaaaccattatctgatggccagtctaacagagtgacatttaac
ttgacgccagaactcattcatcagatatttgctgaaaaaccagctgttcgccaagcatac
ttgaagtttgtcccgcacaagttgaacgaaatcgagttctggaccaaatattcaagagca
caatttcttcacagtacgagaaatgtagttgcagctgcagcagagggtgatgaagatgag
gagcttgctgttttcttgaagagagatgatatgctggcaaatgaagctcggagaaagatt
aggcgtgttgatccaactgtggacattgaagctgatgagggtgatgattacacacatctc
ccggatcatgggttagttcgtgatgagaccaaagatgttttggaccctcggtatgagcca
taccgacgatcattctcgcaagatttgaatcagcattctgcagttgttcttcaaggaaga
gttgtggatgctgagctgactgaaccaagagatgttgctgaagcccttaccaggaaaaag
caggctgaactatctgaggacaaattaaatacaaattttgagaaagaactatccaacagg
atttctcgaagtgcagagcttgaagatcttcagggccctcaagatcctgctgttgcaccc
ctcagtatcaaggatccgagggactactttgattctcagcaggccaatgcactaaaagcg
ttgggagatacaggttcagctgcaaaacccttgatttccagtgcgaacgcacggcaagct
tatgactcattaaggaatgccataattgatattaatgaaatggggttaactgagccgata
atgaatcaggaggttgcactaaaggtcctcagtgggttgacccagagtatctctagcacc
aagttccatcttggaaacagttccaacgacagtatcctcgatatgttaccaaaagttact
aaggaagaactcttgcatcactggacttcagtgcaggaactcttgaaacacttttggtca
tcataccctcttacaaccaagtacctttataacaaggtcaccagattgaaagacgcaatg
tcccaagtatatccaaagttgcaggagatcaaggaatctgtacaatctgatttcaggcat
caggtgtcacttcttgttcacccaatgcttcaggctctggatgcggcgtttgcacactac
gaggcagatttacagaggaggtctgccaagagcggagagaaacgcaatgggtttatgtcg
tag
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