Salvia splendens (scarlet sage): 121787975
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Entry
121787975 CDS
T07627
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121787975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sspl03041
]
121787975
03009 Ribosome biogenesis [BR:
sspl03009
]
121787975
Enzymes [BR:
sspl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121787975
Spliceosome [BR:
sspl03041
]
Complex A
U1 snRNP components
U1 related factors
121787975
Complex B
121787975
Ribosome biogenesis [BR:
sspl03009
]
Eukaryotic type
Pre-60S particles
Helicases
121787975
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
121787975
NCBI-ProteinID:
XP_042042765
LinkDB
All DBs
Position
22:690039..693958
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AA seq
628 aa
AA seq
DB search
MFSNHDSRLHDAGSYRQRRVDLVGPPPMMIPPPMPGGAPPSYGRGGPHVAPPFTVGGARS
GYQIDHGAGRGFGAGYGGGFTDRGRGGGGGGFGGRGHSYNGVGDRSGHEGGRGGQFSGRS
FDHGRGGGFGGGRGFSGGRGGRGGRSRGDDLDNISLPKPDFSGLIPFKKDFYVESPSVRA
MTEQEVMMYRARREITVEGHDVPKPIRMFEEASFPGYCLEVIARLGFVEPTPIQSQGWPM
ALRGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLAQGDGPIVLVLAPTRELAIQIQEEA
LKFGSVANIRSTCIYGGAPKGPQIRDLKRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVL
DEADRMLDMGFEPQIRKIVSQIRPDRQTLYWSATWPREVETLARQFLRNAYKVIIGSQEL
KANQSIHQIVEVMTDTEKYNRLIRLLKEVMDGSKILIFVETKKGCDQVTRQLRMDGWPAL
SIHGDKNQDERDWVLAEFKSSRTPIMIATDVAARGLDVKDIKVVVNYDFPSNLEDYVHRI
GRTGRAGATGTAFSFFTHANVKHARELIKILQQAGQAVLPQLAALSRTAGSDMGGSGRNF
RSRGRGGGGGFGNRSGSNVIPIGGRRPY
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atgttcagcaaccatgattctagactccacgacgccggatcttaccgacagcgccgagtt
gatttggttgggccgccacctatgatgattccgccccctatgccaggtggtgctccgccc
agctatggccggggaggtcctcatgtggcacctccgtttacggtgggtggtgctaggagt
ggatatcagattgatcatggtgctggaagagggtttggggctggttatggtggtggtttt
actgaccgaggtagaggcggaggtgggggagggttcggtggtagaggacatagctataac
ggcgtgggagataggagtggccatgaaggtgggagaggaggtcaattctcgggaaggagt
tttgatcatggtcgtggtggtggttttggtggaggtcgtggttttagtggaggtcgtggt
ggcagaggaggtaggtcgaggggggatgacttggacaacatttcgcttcctaaacccgat
tttagtgggttgattccctttaaaaaggatttttatgtggagagcccatctgtgagggca
atgactgagcaggaggtgatgatgtatcgtgcacgtcgggagattactgttgaaggacac
gatgtccccaaacctatccggatgtttgaagaagcaagtttccctggttactgccttgag
gtaattgccagactggggtttgttgagccaacacctattcaatcacaaggatggcccatg
gcattaagaggtcgagatcttataggcattgctgagacgggttccgggaaaactttgtca
tatttgctgcctgcttttgttcatgttagtgctcagcccaggttggctcaaggtgatggt
cccatcgtactagtcctagcacctactagagaattagctattcagattcaagaagaagct
ttgaagtttggatcagttgctaatataagaagtacttgtatatacggtggtgccccaaag
gggccacaaattcgtgatcttaaaagaggagttgaaattgtcatagctacacctggtaga
ttgattgatatgttggaagctcagcacactaacttgcgaagagtgacttaccttgtgcta
gatgaagccgaccgaatgctagatatgggatttgaaccccaaatcaggaaaattgtttct
cagattcgcccagatagacagaccctgtactggagtgccacatggccaagggaagtggaa
actctggcaagacagttcctacgcaacgcttacaaggtcatcattggatctcaagaactg
aaagcaaatcaatctatacatcaaattgttgaagttatgactgatacggagaaatataat
aggttgatcagattgctgaaagaagtgatggatgggagtaaaattttaatttttgtggag
actaaaaagggatgtgatcaagttacaagacaactaagaatggatggatggccagctctg
tccatacatggtgataaaaaccaggacgaaagggattgggtcctagcagagtttaaaagt
agcagaactcctataatgattgctactgatgttgctgctcgtggccttgatgtgaaggac
attaaagtcgtagtcaactacgatttcccttcgaatttggaggattatgtccacaggatt
ggccgaactggtcgtgcaggagctacgggaactgctttctcatttttcactcatgcaaat
gtgaagcatgctagagaacttatcaagattctgcaacaagctgggcaggccgtgctgcct
caacttgctgctttgtcacgaactgctggatcggatatgggagggtcggggcgtaacttc
cgatccagaggccgaggaggaggcggcggctttggcaaccgttcggggtctaatgtgata
cctattggtggaagaaggccttattag
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