Salvia splendens (scarlet sage): 121788022
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Entry
121788022 CDS
T07627
Name
(RefSeq) cleavage stimulation factor subunit 77-like
KO
K14408
cleavage stimulation factor subunit 3
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121788022
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121788022
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
121788022
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_14
HAT_Syf1_CNRKL1_C
TPR_19
TPR_15
TPR_2
TPR_CcmH_CycH
NatA_aux_su
TPR_Edg1
TPR_16
BTAD
Motif
Other DBs
NCBI-GeneID:
121788022
NCBI-ProteinID:
XP_042042808
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Position
2:complement(11127926..11138153)
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AA seq
762 aa
AA seq
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MATETAQTNSLSLSDGNADKLNVEAAEKLANEALRLPMSDAVPIYEHLLANFPTSAKYWK
QYVEALMASNNDEATKQVFSRCLLNCLQVPLWRCYIRFIRKVNDKKGIEGQEETKKAFEF
MLNYVGSDIASGPVWMEYVAYLKSLPAQTTLEESQRMTTIRKLYQRAIVMPTHHVEQLWR
EYENFENSVSRALAKGLVTEYQPKYNSARAVYRERKKYVDEIDWNMLAVPPSGTPKEEMQ
WVAWKKLLSFEKGNPQRIDNVSANKRITFAYEQCLMYLYHYPDIWYDYAMWHAINGSQDS
AIKVFQRALKALPDSGMLKYAYAELEETRGAAQVAKKVYESLLGDGVNATALSHIQFIRF
LRRTEGVEAARKYFLDARKSPNCTYHVYVAYAMMAFCLDKDAKLAHNIFEAGLKRFMHEP
SYILEYADFLCRLNDDRNIRALFERALSSLPPDESVEVWKRFAQFEQTYGDLTSMLKVEQ
RRKEALCRMTENGESILENSLQDVISRYSFMDLWPCSTKDLDHLSRQEWLFRGVNKKIEN
PTPVNGPSSADRTTPEVPINSNVSGKVVYPDVSRMVIYAPGQKPGITTPVVAGVSSTLPN
GISGGAATINDTLKSLPPTLAVFVSNLPAVEGPSPDVDFVISICLQSNIPPASAKPSAPQ
QLPSGPVPSASDASGSSKLRQTRDRQAGKRKGMERQDDDDTSTIQSQPLPKDAFKIRQLQ
KALGASSRTGGASSRTGGTSSRTGGSASYGSGFSGDFSGSSG
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
atggccactgagacagcacaaacgaactctctctctctttctgatgggaatgcagataag
cttaacgtcgaagctgctgaaaagcttgctaatgaggcactgcggttgccaatgtcagat
gcagtgcccatatatgagcatcttctggccaatttccccacttcggcaaaatactggaag
caatatgttgaggctctcatggccagcaacaatgatgaagcaacaaaacaagtttttagc
cgttgtcttttgaattgcttgcaagttcctctttggcgctgctacattcgcttcataagg
aaagttaatgataagaagggaatagagggtcaagaagagacaaagaaagcttttgaattt
atgcttaactatgttggatcggatatagcatctggccctgtatggatggagtatgttgca
tatttaaaatcactacctgcacaaacaactttagaagagtcgcagcggatgactaccata
cgtaaactataccagagggctattgttatgcctactcatcatgttgaacaactttggaga
gagtacgagaatttcgagaattcagtgagccgtgcactggcaaaagggttggtgactgaa
tatcaaccaaaatataacagtgcaagggctgtttaccgagaacgtaagaaatatgttgat
gaaattgactggaatatgcttgctgttcctccttctggtactcctaaggaggaaatgcaa
tgggtggcctggaaaaagttattaagttttgagaaaggtaatccacagagaattgacaat
gtttcagcaaataaaaggataacatttgcgtatgaacagtgcctcatgtacttgtatcat
taccctgatatatggtatgactatgccatgtggcatgccataaatggttctcaagactca
gctattaaagtttttcaacgcgcactgaaggctcttcctgattcaggtatgcttaagtat
gcctatgctgagctagaggagactcgtggagcagctcaggtggcaaaaaaagtgtatgaa
agtcttcttggagatggcgtgaatgcaacagcattatctcacatccagtttatacgattc
ttaaggaggactgaaggagttgaagctgctcgcaaatactttctggatgcccgtaaatct
ccgaactgcacctaccatgtttatgttgcatatgcaatgatggcattctgtctggataaa
gatgcaaagcttgcacacaacatatttgaagcaggtctcaaacgttttatgcatgaaccc
agctacattcttgaatatgctgatttcttgtgccgcttgaacgatgatagaaatatccgt
gctttgtttgagcgtgctttgagctcacttccacctgatgaatctgttgaggtttggaaa
agatttgcccaatttgagcagacgtatggagatcttaccagcatgttaaaggttgagcaa
aggaggaaagaagctttatgccgtatgactgagaatggagaatcaattttagaaaattct
ctgcaagatgtcatttcgcggtatagtttcatggatctgtggccttgctcaacgaaggac
ttggatcatttatctcggcaagagtggctctttagaggtgtcaataagaagattgaaaat
cctactcctgtaaatggacctagctctgcagatcggactacaccagaagttccgattaat
tcaaatgtttctggcaaggttgtttatccagatgtatcaagaatggtgatttatgctcct
ggacaaaagcctgggatcacaaccccggtggtagcaggtgtttcaagcacattgccaaat
ggcattagtggaggagcagccacaatcaatgatacactgaaatccttacctccaacattg
gcagtctttgtatcaaatttgccagccgttgaaggtccatctcccgatgttgattttgta
atatccatatgtttgcaaagcaacataccaccagctagtgcaaaacccagtgcacctcaa
caattgccatctggacctgttccaagtgccagtgatgcatctggttcaagcaaattaaga
caaacaagagacagacaagctggaaaaagaaaaggaatggagaggcaagatgatgatgac
acgtctactatccaaagccaaccattacctaaagatgctttcaagatacggcaactgcag
aaagcgcttggggctagttctcgtactggcggggctagttctcgtactggtggaactagt
tcgcgaactggtggctctgcatcatatgggagtggattttcaggcgatttctctggaagt
tcgggttga
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