Salvia splendens (scarlet sage): 121788486
Help
Entry
121788486 CDS
T07627
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121788486
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121788486
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121788486
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
121788486
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
121788486
NCBI-ProteinID:
XP_042043085
LinkDB
All DBs
Position
Unknown
AA seq
556 aa
AA seq
DB search
MSGVLSSGLNGSNSNIPDSTGRTFTTSFSAQSGSSGAVLNQSSGILQGLHNIHNSFNMSS
MPGPYASRNSTNIGGLPNGVQQAPGSVSNGRYAINSLPNILSQLSLGSSHGHSGLNNTGG
PSVLPNMGNTGRITNTISGLVGGGNASRGGSSTGVGNIPGLASRLNLSAPQVVSMLGNSY
SGAGVPLSQNQFQAGNNSFSFMALLNESNAHDNATFDVNDFPQLSGHPPSAGGSHGQIGM
MQKHNIGFGQQNQEFSIQYEDFPALPGYKGGLNVGSAEYTINAHQKEQIHDSMTNLMQQS
QQLSLGRSSGFNFGSSYSSHHPQQHRGSSINGTGVSYLTSGSSDLHIHGPEQYQQFQQSQ
SRFISPFRDKDIKATPGSQSIPDQYGMLGLISIVKKVNPTLATLALGLDLTTLGLNLNSS
ETLHKKFSSPWSDEPVRGEPEFSVPECYYAKQTPPLKQTYFARFRPETLFYIFYSMPKDE
AQLFAANELYNRGWFYHKDLRFWFTRVKNMEPLVKTNSYERGCYFCFEPNGWQTVRKDNF
VLQYEMVEKRPVLPQQ
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggggtactgagttcaggtttgaatggatcaaattctaatattccggatagcact
ggaagaactttcacaacttccttttctgcgcaatcaggttcctctggagctgtcttgaac
cagtccagtggtattctccaggggcttcataatatccataatagctttaacatgtcaagc
atgcctgggccttatgcatcaagaaattcgacaaatattggtggtcttccaaatggtgtc
caacaagctccaggaagcgtgtctaatggtagatatgcgataaatagtcttcctaacata
ctttctcagctatctctgggaagttcacatggacattcaggtcttaataatactgggggc
cccagtgtacttccaaatatgggaaatacagggagaattacaaatactattagtggtctt
gtgggcgggggcaatgcttcaaggggtggaagctctacgggcgttggaaacatccctggt
cttgcatctcgtttgaatctgtcagctccacaggtggtatccatgctgggcaattcttac
tctggtgctggtgtgccactttctcaaaaccaatttcaagctggaaataatagttttagc
tttatggcattactaaatgaatcaaatgctcatgacaatgctacctttgatgtaaatgac
tttcctcagctatcggggcatcctccttcagctggtggctctcatgggcaaataggtatg
atgcaaaaacataacattggttttggtcaacagaaccaagaattcagcattcaatatgaa
gatttccctgctttaccgggatataaaggtggtcttaatgttggtagtgctgaatatacc
ataaatgctcaccaaaaagaacagatccacgacagtatgacaaatttaatgcagcagtct
cagcaattatctctggggaggtcttcaggttttaattttggcagctcttattcatcacat
catcctcaacaacatcgtggttcctcaataaatggcacaggggtttcctatctaacatcg
ggcagctccgatcttcatattcatggtcccgagcagtatcagcagttccagcagtcccaa
tctcgtttcataagtccatttagagataaagacataaaagccacaccgggatcccaaagt
ataccggatcaatatgggatgcttggtctaataagtatcgtaaaaaaggtaaatccaact
ttggccactcttgctctgggacttgatctgacgaccctaggtttaaacttgaattcatcc
gagactcttcacaagaagttttcatctccctggtctgatgagcctgtcagaggagaaccg
gagttcagtgtacctgagtgctattatgccaaacagacacctcctttaaagcaaacctat
tttgcaagattccgtccagaaacactattctacatcttttacagcatgcccaaagatgag
gcacaactttttgcagcaaacgaactttacaacagaggttggttttaccacaaagatctg
aggttttggtttacgagggtgaagaatatggaacctcttgtcaagacaaacagttatgag
aggggttgctacttctgttttgaacccaatggatggcaaacagtgagaaaggataacttc
gtcctgcaatatgaaatggttgagaaaagacccgtgctgccgcagcaatag
DBGET
integrated database retrieval system
