Salvia splendens (scarlet sage): 121788552
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Entry
121788552 CDS
T07627
Name
(RefSeq) polyadenylate-binding protein 8-like
KO
K13126
polyadenylate-binding protein
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03015
mRNA surveillance pathway
sspl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121788552
09123 Folding, sorting and degradation
03018 RNA degradation
121788552
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121788552
03041 Spliceosome [BR:
sspl03041
]
121788552
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
121788552
mRNA cycle factors
Stress granule specific factors
121788552
Spliceosome [BR:
sspl03041
]
Complex C
Other components
Complex C specific factors
121788552
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_10
RRM_occluded
RRM_3
RBD_DEAH11
RRM_7
RRM_Nup35
RRM_MARF1
HPS3_C
Tfb2
Motif
Other DBs
NCBI-GeneID:
121788552
NCBI-ProteinID:
XP_042043133
LinkDB
All DBs
Position
Unknown
AA seq
630 aa
AA seq
DB search
MQSQVPVVNAAAASGGAPFVTSLYVGDLEVNVTDSQLYNLFSNMGDVVSVRVCRDLTSRR
SLGYGYVNFGNSQDTERALMELNFTPLNGKPIRVMYSHRDPSVRRSGNGNIFIKNLDKDI
DHKALHETFSSFGSILSCKVATNSSGQSLGYGFVQYATEESAQKAIEKLNGMLLNGKQVY
VGPFVRKQEREMEVDKTKFTNVFVKNIYETTTEEDLQKMFGEFGQITSVVVMRNDDGTSK
CFGFVNFEDADDAGRAVDTLNGIKIDNKELYVGRAQKKSEREVQLKNQFEQSLKEAVDKS
QGSNLYVKNLDDSINDDQLKELFASYGSITSCKVMRDPKGISRGSGFVAFSSPEEAARAL
SEMNGKMIASKPLYVALAQRKEDRRAQLQAQFSQMRPITMAPTVAPRMPMYTPGGPGLGQ
QIFYGQAPPAMIPPQPGFGYQQQLVPGMRPGGPLMPNMFVPMVQPGQQGPHPGGRRGNAG
PMQHGPQPVPVMQQQMVPRGRGMPDPMQGMAGGMLPVPYEMGGLPLRDAGISQPVPIGAL
ASALANASPSEQRTMLGENLYPLVEQLKPETAAKVTGMLLEMDQTEVLHLLESPEALKAK
VAEAMEVLRSVSQQQSGSPAEQLATLSLNE
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atgcagtctcaggttccggtggtgaatgcggcggcggcttctggtggcgcgccgttcgtg
acctcgctgtacgttggcgatctcgaagtcaacgtgactgattctcagctctacaatctg
ttcagcaatatgggagatgtggtatcggttagggtctgtagggatttaaccagccggcgc
tcgctaggatacggatacgtcaactttggcaactctcaggataccgaaagggcactgatg
gagctgaacttcactccactcaatggcaaacccattagggttatgtattctcatcgagac
cctagtgtgcgccgtagtggcaatggaaatatatttatcaagaatttggacaaggatatt
gaccacaaagctctgcacgagacattttcttcttttggttccatcctctcatgcaaagta
gcaactaattcttctggccagtcattaggctatggctttgtgcaatatgccactgaagaa
tccgctcagaaagctattgagaagcttaatggaatgttattgaatggaaaacaagtttat
gtcggaccttttgtccgcaagcaagaaagagagatggaagtagacaagacgaaattcact
aatgtgtttgtcaaaaatatatatgaaacaacaactgaagaagatcttcagaagatgttt
ggtgaatttgggcaaattaccagtgtagttgtgatgagaaatgatgatggaacttccaaa
tgttttggatttgtcaactttgaagatgcagatgatgctggcagagctgttgacacttta
aatggtataaaaattgataacaaggaactgtatgttggtagagcccagaaaaaatctgag
agggaggtacaacttaagaaccaatttgagcagagtttgaaggaagctgttgacaaatca
cagggttccaacctgtatgttaagaatctggatgatagcatcaatgatgatcagcttaag
gagttattcgcttcatatggttcaataacatcttgcaaggttatgcgggacccaaaggga
attagcagaggttctgggtttgttgcattttcatcacctgaagaggctgccagagctctc
tctgaaatgaatggcaagatgattgctagcaaacctctttatgttgcacttgctcagagg
aaagaagatagaagagcacaactacaggctcaattttctcaaatgaggccaattacaatg
gcacctactgtggctcctcgtatgccaatgtatacgcctggtggtcctggtctagggcaa
cagatattctatggtcaagctccacctgcaatgattcctcctcagcctggatttggatat
caacagcagcttgtacctggtatgaggcctggtgggcctctcatgccaaatatgtttgtc
cctatggttcaaccgggtcagcaaggtccacatcctggtggaaggagaggtaatgctggg
ccaatgcaacatggccctcagcctgttcccgtaatgcaacagcagatggttcctagagga
cgtggcatgcctgatcctatgcaaggtatggcaggaggcatgcttcctgtcccatatgaa
atgggtggcttgccattgcgtgatgcaggaatctctcagccagttcctatcggggctctg
gcatctgcacttgcaaatgcttctcccagtgaacaaaggacgatgttgggagagaatctg
tacccacttgttgaacaactgaagccagagacggcagccaaggttactggaatgctactg
gaaatggaccagacagaggttctgcacttgttggagtcaccagaagctcttaaagcgaag
gttgcagaggcaatggaggtgctgaggagtgtgtcccagcagcagagcggctctccagct
gagcagctggctacattgtcattgaatgagtga
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