Salvia splendens (scarlet sage): 121792343
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Entry
121792343 CDS
T07627
Name
(RefSeq) zinc finger CCCH domain-containing protein 40-like
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121792343
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sspl03041
]
121792343
Spliceosome [BR:
sspl03041
]
Complex B
Other components
Prp19-related factors
121792343
Complex C
121792343
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
RRM_1
zf-CCCH_RBM22
Torus
zf_CCCH_4
zf-CCCH_2
zf-CCCH_12
zf-CCCH
zf-CCCH_4
zf-CCCH_3
RRM_3
zf-CCCH_10
RRM_YTH1
RRM_occluded
zf-CCCH_PARP12
Motif
Other DBs
NCBI-GeneID:
121792343
NCBI-ProteinID:
XP_042046180
LinkDB
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Position
2:complement(34196177..34199594)
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AA seq
473 aa
AA seq
DB search
MAHRLLRDAEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGR
DARYKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSIDSNDAIPKSDVNREYFAE
EHDRKTRAGIDYESSFGKARPNDTILKLQRTTPYYKRNRAHVCSFYVRGQCTRGPECPYR
HEMPVEGELSQQNIKDRYYGVNDPVAMKLLSKAGEMPSLEPPDDESIRTLYVGGLDARIT
EQDLRDNFYAHGEIESVKMVLQRACAFVTYTTREGAEKAAEELANKLVIKGLRMKLLWGR
PQAPKLDSEGSDEAKQQAAVTHSGLLPRAVISQQQNQPLQAPPPGGQTQPPPVPYFNIPP
LPQHERAYYPSMDPQRMGALIPSQEGPSSGSSTSNENRGDSGQQHQQAQQYGYPSTAPSP
GQFYPPYYQQYGYMGPPPPVQPPNQPHHQQYQGPQGRMPAAPTAPATGTSQQP
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atggcacacagactgctgagggacgcggaagccgatgggtgggagcggtctgatttccca
attatatgcgagtcatgccttggcgacaatccatacgtccgaatgacaaaagcagattat
gataaggagtgtaagatctgcactcggccatttacggtgttcaggtggaggcctggtcgt
gatgcaagatacaagaaatctgagatatgccaaacttgtagtaagctgaaaaatgtttgt
caggtttgccttttggatcttgagtacggattacctgttcaggttcgtgatactgctctg
agtattgattctaatgatgccattccaaagagtgatgtgaatagggaatactttgcagag
gagcatgatcgcaagacaagggctgggattgattatgagtcttcatttggaaaggctcgt
ccaaatgatactattttgaagctccagagaaccacaccatattacaagagaaaccgagct
catgtttgcagtttctatgtccgtggtcaatgtacaagaggtccagagtgcccttacagg
cacgagatgcctgttgaaggtgaattgtctcaacaaaacattaaagatcgctactacgga
gtgaatgatccagtggcaatgaagctattgagcaaggccggggagatgccttctttggag
cctcccgatgatgagagcattagaaccctctatgtgggagggcttgatgctaggattaca
gagcaggatctaagggacaacttctacgcacatggagaaattgagtcagtcaagatggtt
ctccagagggcctgtgctttcgtgacttacacgacacgagaaggtgctgagaaagcagct
gaggaacttgccaacaaactagttattaaaggcttgaggatgaagctgctgtggggcaga
ccccaagctccaaagctggactctgaaggctctgacgaagcaaagcagcaagcagcagtg
actcacagtgggttgctcccaagggcagtcatatcgcagcaacagaaccagcctcttcag
gctcccccacctggcggccagacacaaccaccaccagtgccatatttcaacattcctcct
ctgcctcagcatgagagggcatattatccttctatggatccccagaggatgggtgccctc
attccatctcaagaggggccttccagcgggtcatcgacatctaatgaaaatagaggtgat
tctggacagcagcatcaacaagctcagcagtatggctacccgagcacggcgccctctcca
ggtcaattttaccctccatactaccagcagtatggctacatgggaccgcctcctccagtg
caaccacctaatcaaccacaccatcaacagtatcaaggacctcaaggcaggatgcctgcc
gccccaaccgctccagctactgggacatcgcagcagccatga
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