Salvia splendens (scarlet sage): 121792597
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Entry
121792597 CDS
T07627
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03020
RNA polymerase
sspl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
121792597
09124 Replication and repair
03420 Nucleotide excision repair
121792597
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sspl03021
]
121792597
03400 DNA repair and recombination proteins [BR:
sspl03400
]
121792597
Enzymes [BR:
sspl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
121792597
Transcription machinery [BR:
sspl03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
121792597
DNA repair and recombination proteins [BR:
sspl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
121792597
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
TACC_C
Motif
Other DBs
NCBI-GeneID:
121792597
NCBI-ProteinID:
XP_042046539
LinkDB
All DBs
Position
2:37592596..37602273
Genome browser
AA seq
1826 aa
AA seq
DB search
MDLRFPFSPAEVAKVRLVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI
DRKMKCETCMANMADCPGHFGHLELAKPMFHIGFMKIVLSILRSVCFNCSKILADEEEPK
FKQAMRIRNPKNRLKKILDACKNKSKCEGGDEIDVRDQDTDEPVKKSRGGCGAQQPKISI
DGMKMVAEYKAQKKKSDDQDQMPEPVERKQQLSAEKVLSILKRITDEDCQLLGLNPKYAR
PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS
EFAQLLQFHVATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDS
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPTILKPKPLWTGKQVFNLIIPRQIN
LLRYSAWHQETEKGFITPGDTQVRIEKGELLSGTLCKKTLGSSSGSLIHVIWEEVGPDAA
RKFLGHTQWLVNYWLLQNAFSMGIGDTIADHDTMTKISETINTAKNEVNELIRAAQEKQL
EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLAESNNLKAMVTAGSKGSFINISQMT
ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLSPQEFFFHAMGGRE
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQP
LESLKLKKLDFSDMYKYEIDHPNWNPNYMLPEAVEDLKTIREIRSVFDAEVQKLEADRYL
LGTEIATTGDNSWPLPVNIKRLVLNAQKTFRVDFRRPSDMHPMEIVEAVDKLQERLKVVV
GDDYLSLEAQKNATLFFNILLRSALASKRVLKEYRLTREAFDWVVGEIESRFLQSLVAAG
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK
PGVSKTKEKAKNVQCALEYTTLRSVTQATEVWYDPDPTSTIIEEDVEFVKSYYEMPDEVI
DPDKVSPWLLRIELNREMMVDKKLSMADIAEKITAEFDDDLSCIFNDDNAEKLILRIRIM
NEEAPKGELNDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKNGKVNKFDENEGFKA
ENEWMLDTEGVNLLAVICHEDVDASRTTSNHLIEVIEVLGIEAVRKALLDELRVVISFDG
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY
LRGVTENIMLGQLAPIGTGDCALYMNEEMLKQAIEIPLPSYMEGGLEFGMTPGRSPISGT
PYHDGMMSPNYMLSPNLRLSPVSDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSP
TSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS
YSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT
SPSYSPTSPSYSPTSPAYSPTSPGYSPTSPTYSPTSPSYNPSARYSPSQAYSPTSPKITP
SSPYSPSSPSYSPTSPSYSPSSPSYSPSSPYSSGGNAGYSPSSPQYSPSGGYSPSAPGYS
PSSASQFSTQMDDKDNKSVKDDKGNQ
NT seq
5481 nt
NT seq
+upstream
nt +downstream
nt
atggatctgcgcttccccttctcgccggcagaggtcgcgaaagtccgccttgtccaattc
ggcatactcagccccgatgagattagacaaatgtcggttgtgcacatagagcacagcgag
acgacggaaagaggcaagcccaaaatcggtggtttgagcgacccgcgtttggggacgatt
gatcgaaagatgaagtgcgagacttgtatggccaacatggctgactgccccggtcatttt
ggtcaccttgagctcgcaaaacctatgtttcacattgggttcatgaagattgtgctcagt
attctccgcagtgtctgcttcaattgctccaagattttagctgatgaggaggaaccaaag
ttcaagcaagcaatgagaattagaaaccctaaaaataggttaaagaagatattagatgcc
tgcaaaaacaaatccaaatgtgaaggaggtgatgagattgatgtacgagatcaagatact
gatgaacctgtgaagaagtctaggggtggatgtggtgctcagcagccaaagatttctata
gatgggatgaagatggttgctgaatacaaggctcagaagaagaaaagtgatgatcaggat
cagatgcctgaacctgtagaaagaaaacaacaactctctgcagagaaggtacttagcata
ctgaagaggattactgatgaagattgtcagttgttgggcttgaatccaaaatatgctcgc
cctgactggatgattcttcaagttcttccaatccctcctcctccagttaggccttctgtg
atgatggatacttcttcccggagtgaggacgatttaactcatcaactggccatgatcatt
aggcacaatgagaatttaaagaggcaggagcggaatggggctcctgcacacatcatctca
gagtttgcacagttgctgcagtttcatgtggctacatactttgacaatgatttacctggt
caaccaagggctacccaaagatctggcagacccattaaatcaatatgtagtaggctcaag
gcaaaagaaggtaggataagaggcaacttgatgggtaagcgggtagatttttcagctcgg
actgtgatcacacctgatccaacaatcaacattgaccagctgggtgtgccttggagtatt
gccttaaatctcacatatcctgaaactgttactccatataacattgaaagattgaaagag
cttgtggaatatggaccccatcctccccctggtaaaactggcgcaaaatatattattagg
gatgatggacagaggcttgatctccggtacttgaaaaagagcagtgatcagcatctggaa
cttggatacaaggttgagcgacacttaaatgatggagactttgtcctgttcaatcgtcaa
ccgagtctccataaaatgtccattatgggccacagaattaagattatgccttattcaact
ttccgcttaaatttgtctgtcacttcaccctacaatgctgattttgatggagatgaaatg
aatatgcatgtgcctcaatcatttgaaactagagctgaagttttggaactaatgatggtt
ccaaaatgcattgtgtcacctcaagccaatcggcctgtaatgggaattgtgcaggattca
ctattaggatgtcgcaaaattactaagagagatacatttattgagaaggatgtttttatg
aatatcctaatgtggtgggaggattttgacggcaaagtacctgctccaacaattctgaaa
cctaagcctctttggactgggaaacaagtatttaatttaatcataccaaggcagataaat
ctattaaggtattcagcatggcatcaagaaactgaaaagggatttattactccgggagat
actcaagtacgtatagagaaaggggagttactttcaggcaccctatgcaagaaaacactc
gggtcatctagtggaagtctcatacatgttatttgggaagaagttggtccagatgcagct
cggaaatttttggggcatacacaatggcttgtcaattactggcttttgcagaatgctttt
agcatgggaatcggtgataccattgctgatcatgataccatgacaaagatctctgaaact
attaacacagctaagaatgaggtgaatgaacttatcagggctgcacaagaaaagcaattg
gaggctgagccaggaagaacaatgatggaatcgtttgagaacagagttaaccaggtgttg
aataaggctcgtgatgatgctggaagcagtgctcagaagagcttggcagaaagtaacaac
ctcaaagccatggtcactgcaggatctaagggaagtttcatcaatatttctcagatgact
gcgtgtgtgggccagcagaatgttgaaggcaaacggattccttttggttttgtggatcgc
acacttccacacttcaccaaagatgattatggtccagagagtcgtggttttgtggagaac
tcatatctccgaggactgtctcctcaagagttctttttccatgccatgggtggtagggaa
ggtctcattgacactgcagtgaaaacttctgagactggatatattcagaggcgactggtg
aaggctatggaagacatcatggttaagtatgatgggactgttaggaattccttaggtgat
gtcattcagtttctgtatggggaagatggtatggatgcagtttggattgaatcacaacct
ttggaatcactgaagttgaagaaattggatttcagtgacatgtacaaatatgagattgat
cacccaaactggaatcctaattatatgttgcctgaagctgtggaagatctgaaaacgatt
cgcgaaatccgcagtgtgtttgatgcagaggttcagaaacttgaagctgatagatatcta
cttggaacagagattgccaccactggtgacaattcttggcccctccctgttaacatcaaa
aggcttgttttgaatgcacagaagaccttcagagttgatttccgaagaccctctgatatg
catccaatggagattgtagaagctgttgataagttgcaagaaaggcttaaggtggttgtt
ggtgatgattatctgagtttggaagcacagaagaatgctactcttttcttcaacatattg
cttcgtagtgctttagcaagcaaaagggtactaaaggagtacagacttacccgtgaggct
tttgactgggtagttggcgagattgaatctcgttttcttcagtcacttgttgcggctgga
gaaatgatcggatgtgttgctgcacaatccattggggaacctgctacacagatgacactc
aatacatttcactatgctggtgtgagtgctaagaatgttactttaggtgtaccaaggttg
agggagatcattaatgttgctaagaaaattaaaacaccctctctctcggtatatctgaag
cctggtgtaagcaaaactaaggagaaggccaagaatgtccagtgcgctctggagtataca
actttgcggagtgtaacacaagcaacagaggtatggtacgatccagatcctacaagcact
attattgaggaagatgttgaatttgtgaagtcttactatgagatgccagatgaagtgatt
gaccctgacaaagtctctccatggttgcttcgcatagagttaaacagagaaatgatggtg
gataaaaaactcagcatggctgatattgcagagaagattactgccgaatttgatgatgat
ctgtcgtgcatatttaatgatgataatgctgaaaagcttatccttcgtattcgtattatg
aatgaggaagcccctaagggtgagttaaatgatgaatcggctgaggatgatgttttcctg
aaaaagattgagggtaacatgctcacagaaatggctcttcgaggaataccagatatcaat
aaggtgttcataaagaatggcaaggtgaataagtttgatgaaaatgaaggttttaaggct
gagaatgaatggatgcttgacacagaaggtgttaatcttttagctgtcatttgccatgaa
gatgtagatgcaagtaggacaacaagcaatcacttgattgaagttattgaagttcttggc
atcgaggcagttcgcaaagcattgctcgatgagctgcgcgttgtcatatcatttgatggg
tcttatgttaactatagacatttggcaatattgtgtgataccatgacatatcgtggtcac
ttgatggctatcactcgtcatggtattaatcgcaatgatactggccccatgatgagatgc
tcctttgaagaaacagtggacattctacttgatgctgctgtgtatgcagaaactgattac
ctcaggggtgtcactgagaatatcatgttaggtcagcttgcacctattggcacaggtgat
tgtgcgttgtatatgaacgaagagatgctaaaacaagctattgagatccctctgcccagt
tatatggaaggtggactggagtttggcatgactcctggccgttcgcctatatcagggacc
ccatatcatgatggcatgatgtcaccaaattatatgctgagtccaaatcttcgattatct
cctgtttcagatgctcagttttctccatatgtgggtgggatggcattttctcccacgtca
tctccagggtacagcccgtcatctcccggatacagcccatcatctcccggttacagtcct
acttcccctggttacagccctacttcccctggttacagccctacttccccaacatatagt
cctagttctcctggatatagccctacaagccctgcatattctcccaccagcccatcttat
tcgccaacatccccttcctacagcccaacatccccgagctacagcccaacatctccgagc
tacagtccaacttctccaagctacagcccaacttctccagcatatagcccaacttcacct
gcgtacagcccaacgtctccagcttacagccccacctcaccctcatacagccccacctca
ccctcgtacagccccacctcaccctcgtacagccccacctcaccctcttacagccccacc
tcaccctcatacagccccacctcaccttcatacagcccaacttcacctgcctacagccca
acttcacctggatacagtcccacctctccaacctacagtccgacctcaccaagttacaat
ccttcagcaaggtacagcccttcacaagcatattcaccaacaagtccaaaaatcacacct
tcaagtccatacagtccatcttccccaagttacagcccaacatcaccatcatattctcct
tctagtccaagttacagtccaagcagcccatacagttcaggaggaaatgcaggctatagt
ccaagctctccgcagtatagccccagcggtggatactcccccagtgcgccagggtactcc
ccatcatctgccagccaattctctacccaaatggatgacaaagataacaagagtgtgaag
gatgacaagggcaatcaataa
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integrated database retrieval system
