Salvia splendens (scarlet sage): 121792905
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Entry
121792905 CDS
T07627
Name
(RefSeq) spliceosome-associated protein 130 A-like
KO
K12830
splicing factor 3B subunit 3
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121792905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sspl03021
]
121792905
03041 Spliceosome [BR:
sspl03041
]
121792905
03036 Chromosome and associated proteins [BR:
sspl03036
]
121792905
Transcription machinery [BR:
sspl03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
121792905
Spliceosome [BR:
sspl03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
121792905
Complex B
121792905
Complex C
U2 SnRNP specific factors
121792905
Chromosome and associated proteins [BR:
sspl03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
121792905
TFTC complex
121792905
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_EML_2
Beta-prop_BBS7
WDR55
Motif
Other DBs
NCBI-GeneID:
121792905
NCBI-ProteinID:
XP_042046972
LinkDB
All DBs
Position
2:41587405..41591839
Genome browser
AA seq
1211 aa
AA seq
DB search
MYLYSLTLQQSTGILCAINGSFSGGKSQEIAVARGKVLELLRPDDNGKLQSLLSVEIFGA
IRSLAQFRLTGAQKDYIVVGSDSGRIVILEYNKEKNTLEKVHQETFGKSGCRRIVPGQYL
AIDPKGRAVMIGACEKQKLVYVLNRDSVARLTISSPLEAHKSHTIVYSICGVDCGFDNPI
FAAIELDYSEADQDPTGQAANEAQKHLTFYELDLGLNHVSRKWSEQVDNGANMLVTVPGG
GDGPSGVLVCAENFVIYKNQGHPDVRAVIPRREDLPAERGVLIVSAAMHKQKSMFFFLLQ
TEYGDVFKVTLDHDNDRVKELKIKYFDTIPVTSSLCVLKSGFLFAASEFGNHALYQFQAI
GDDPDVEASSATLMETEEGFPPVFFQPRKLKNLVRIDQIESLMPIMDMKVSNLFEEETPQ
IFSLCGRGPRSSLRILRPGLAISEMAVSQLPGVPSAVWTVKKNVNDEFDAYIVVSFANAT
LVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPGGIRHIREDGRINEWRTPGKR
TIVKVGSNRNQVVIALSGGELIYFEVDMTGQLMELAKHEMSGDIACLDIAPVPEGRQRSR
FLAVGSYDNTIRILSLDPDDTMDILSLQSVSSPPESLLFLEVQASLGGEDGADHPANLFL
NAGLQNGVLYRTVVDMVTGTLSDARSRFLGLRAPKLFSIFVRGRQAMLCLSSRPWLGYIH
QGHFLLTPLSYETLEYAASFSSDQCAEGVVAVAGDALRVFTIERLGESFNETAIPLRYTP
RKFVVHPKRKLLLIIETDQGAFTAEEREAAKKESFEAAGMGENGNAEQMENGDDEENNNP
LTDEQYGYPKAESGRWVSCIRVLDPRTTQTTCLLELQDGEAAFSMCTVNFHDKEYGTLLA
VGTAKGLQFWPKRSFEAGYIHIYRFKEDGKVLELLHKTQVEGVPLALAQFQGRLLAGIGP
VLRLYDLGKRRLLRKCENKLFPNSITSIQTYRDRIYVGDMQESFHYCKYRRDENQLYIFA
DDTVPRWLTAAQHVDFDTMAGADKFGNVYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGA
PNKVEEIVQFHVGDVVTCLQKASLIPGGGECLIYGTVMGSLGAFLPFTSRDDVDFFSHLE
MHLRQEYPPLCGRDHMAYRSSYFPVKDVIDGDLCEQFPTLPMDMQRKIADELDRTPGEIM
KKLEEIRNKII
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
atgtacctctacagtctaacccttcaacaatccactggaatcctctgcgccataaatggc
agtttctccggcggcaaatcacaagagatcgcggtcgcgcgcggcaaggtcctggagctt
ctgcgccccgacgacaacggtaagctccagtctctcctctctgttgaaatcttcggtgct
attcgctcattagctcaatttcgcctcactggtgcgcaaaaggattacatagtggtcggg
tcggattcggggcgcattgtaatccttgagtacaataaagagaagaatacgctcgaaaaa
gttcatcaggagacgtttgggaagtcgggatgccgtaggatagtacccggccagtacttg
gcaattgaccctaagggtagagctgtaatgattggtgcgtgcgagaagcagaagcttgtt
tatgttttgaatagggatagtgtagctaggttaactatttcgtctccgttggaggcgcac
aagagccacactatagtttactcgatttgtggggtggattgtgggttcgacaatcctatt
tttgcggctatagagctggattactcggaggctgaccaggaccccaccggtcaagctgct
aatgaggcgcagaagcatttgaccttctatgaattggatctggggcttaaccatgtgtct
aggaaatggtctgagcaggttgacaatggtgctaatatgcttgtgactgtacccggtggt
ggggatgggccgagtggtgtgcttgtttgtgcggaaaattttgtaatatacaagaatcag
gggcatcctgatgtaagggcagtcattccgaggcgtgaggacttgcctgcggagcgtggt
gttctgattgtctcggctgctatgcataagcagaaatccatgtttttcttcttgttgcaa
actgaatatggggatgtattcaaagtgacactggaccatgacaatgacagggtaaaagag
ttgaagatcaagtattttgatactattccagtcacatcttccttgtgtgtcttgaaatct
gggtttctgtttgctgcatcagaatttggaaaccatgccttgtatcagtttcaggcgatt
ggtgatgatcctgacgtggaggcgtcttctgctacactgatggaaacagaggaaggtttc
ccgccagtgttcttccagcctagaaagctgaagaatcttgttcggatcgatcaaattgag
agcttaatgcctattatggatatgaaagtgtccaatctatttgaggaagaaacccctcaa
atcttttcactttgtgggcgtggaccacgttcttctctgcggatactgagaccaggtttg
gctattagtgaaatggcagtttcacaattacctggtgttccaagtgctgtatggactgtc
aaaaagaatgtgaatgatgaatttgatgcctatattgttgtctcttttgcaaatgccact
ctcgtactttccattggtgaaactgttgaagaagttagtgatagtggatttcttgacact
acgccttctcttgctgtttctttgattggtgatgactccttgatgcaagtccacccgggt
ggtatcaggcatatcagagaagatgggcgtatcaatgaatggaggactccaggaaagaga
acaattgttaaggttgggtctaatagaaatcaggttgtcattgctctgagtggaggggag
ctaatatattttgaagttgatatgacagggcagctgatggagcttgcaaaacatgaaatg
tccggagacatagcctgtttagatattgctcctgtcccagaaggacgacagagatctcgc
tttctggctgttggatcttatgacaatacgatccgcatcttgtctttggaccccgatgac
accatggacattttgagtcttcaaagtgtttcatctcctccggagtccctactctttctt
gaagttcaggcttcattaggaggtgaggatggagcagaccaccccgctaacctctttcta
aatgctggtttgcaaaatggagttctatacagaacggttgtggatatggtgactggcaca
ctctcagatgctcgttctcgattcttaggtctcagagcacctaagctcttttctattttt
gtgagagggagacaagctatgctttgcttgtcaagtagaccttggcttggatatatacac
caaggtcacttccttcttacccctctgtcgtatgagacacttgaatatgccgcctccttt
tcgtcggaccagtgtgcagaaggtgttgtagctgtggctggggatgctttgagggttttc
accatcgagagactaggagaatcatttaatgaaactgctatacctttgaggtatacacca
aggaagtttgttgttcatcccaagcgaaagcttttgcttataatcgagaccgatcaggga
gcattcactgcagaagaacgtgaagctgcaaaaaaggaatcatttgaggctgctgggatg
ggtgagaacggaaatgcagagcagatggagaatggtgatgatgaggagaacaataaccct
cttacagacgaacaatatggttatcccaaggcagagtctggaaggtgggtttcttgtatc
agagttttagacccgaggacaacacagacgacctgtttacttgagcttcaggatggtgaa
gcagcatttagcatgtgcactgtcaattttcatgacaaggagtacggaactcttttggct
gtaggaacagcaaagggcctacagttttggcccaaaagatccttcgaggctggatatatc
catatatataggttcaaggaagatgggaaggttcttgaacttctgcataaaacacaagtg
gaaggtgtccctcttgctttggcccaatttcagggaagactgctggctggaataggacct
gtgcttagattatatgatttggggaaaagaagattgcttaggaagtgtgagaataagttg
ttccctaattcaattacatctatccagacataccgtgatcggatttatgttggtgatatg
caagagtcattccactactgcaagtatagacgcgatgaaaaccagctgtacatattcgct
gatgacacagtccccagatggcttactgccgcacagcatgtagatttcgacaccatggca
ggggcagacaaatttggtaacgtttactttgttcggttgccacaagatgtctctgatgag
atcgaagaagatccaactggtggtaagataaaatgggagcaggggaagctgaacggggca
ccaaacaaagtggaggaaatagttcagttccacgttggtgatgtggtcacttgcttgcag
aaggcatctttgataccaggaggtggggagtgcctcatttatgggactgtaatggggagt
ttgggggcgttcctcccattcacatcccgtgatgatgttgatttcttctctcatttggag
atgcaccttcgacaggagtacccacctttgtgtggcagagaccacatggcctatagatct
tcctacttcccggtgaaggatgtgattgatggagatttgtgtgaacagttcccaactctg
cctatggacatgcaacgcaaaattgcggacgagcttgatagaactccaggggagatcatg
aagaaactggaagagataagaaacaaaatcatctga
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