Salvia splendens (scarlet sage): 121792963
Help
Entry
121792963 CDS
T07627
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD-like
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03022
Basal transcription factors
sspl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
121792963
09124 Replication and repair
03420 Nucleotide excision repair
121792963
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sspl03021
]
121792963
03036 Chromosome and associated proteins [BR:
sspl03036
]
121792963
03400 DNA repair and recombination proteins [BR:
sspl03400
]
121792963
Enzymes [BR:
sspl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
121792963
Transcription machinery [BR:
sspl03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
121792963
Chromosome and associated proteins [BR:
sspl03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
121792963
DNA repair and recombination proteins [BR:
sspl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
121792963
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD_2
HBB
Helicase_C_2
ResIII
DEAD
NAMPT_N
AAA_11
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
121792963
NCBI-ProteinID:
XP_042047046
LinkDB
All DBs
Position
2:42474414..42479225
Genome browser
AA seq
757 aa
AA seq
DB search
MKFQIEDITVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV
LAKPSNPVKLLYCTRTVHEMEKTLAELRFLHDFQVKELGPSARILALGLSSRKNLCVNPR
VVSAENRDSVDAACRKLTASWVRETAIENPNVPKCDFFESYEKAASDAVLPPGVYTLQDL
RAFGKQKGWCPYFLARRMVQFANVVVYSYQYLLDPKVAGIISKEMQRETVVVFDEAHNID
NVCIEALSVNVRTQTLDGASRNLSRMSQEIERLKATDAGRLRAEYNRLVDGLAQRGDLPT
GNTWLANPALPDDILKEAVPGNIRRAEHFLSVLRRFVQYLKGRMQTENVEKEGPVTFVAS
INSQVGIDQKMLKFCYDRLHSLMLTLEITDTDEFLHIQTICDLATLVGTYTRGFSIIIEP
FDERMPHIPDPVLQLCCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS
FTISLTRDCICPMVLTRGSDQLPVSTKYDLRSDPGVEKNYGKLLLEMASVVPDGIVCFFV
SYSYMDGIVNSWHESGILKEIMKHKLVFIETHDVVETTLALDNYRRACDSGRGAVFFSVA
RGKVAEGIDFDRHYGRLVIMFGIPFQYTLSRILLARLEYLRETFQIKEGDFLTFDALRQA
AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPSWILSHLRDAHLNLSTDMAVHIAREF
LRKMAQPYDKSGAMGKRTLLSQEDLEKMVNGVEEMVF
NT seq
2274 nt
NT seq
+upstream
nt +downstream
nt
atgaagttccaaattgaagacataaccgtatactttccgtacgacaacatctacccggag
cagtactcgtacatgctggagctgaagcgcgccctcgacgccaagggtcactgccttctc
gaaatgccgaccggcaccggaaaaaccatcgcgctcctctctctgatcaccagctacgtc
ctcgctaagccgtccaatccggtgaagcttctctactgcacccgcacggtgcacgagatg
gagaaaaccctagccgaattgaggtttctgcatgactttcaggtcaaggaattggggccg
tcggcgaggattctggcgttggggctctcgtcgaggaagaacttgtgcgtcaatcctcgc
gttgtctcggcggagaatcgcgattcggtggatgctgcttgtagaaagctcacggcgagc
tgggttagggaaactgcgattgagaatcctaatgttccgaagtgtgattttttcgagagc
tacgagaaggctgcttctgatgcggtgttgcctcctggagtttatacgttgcaggattta
agggcgtttgggaagcaaaaagggtggtgcccgtactttctagcacgccgtatggttcaa
tttgcaaatgtagtggtatatagttatcagtacctgcttgatccaaaagttgctgggatc
atatcgaaggagatgcagagggagaccgttgtggtgtttgatgaggcccataatattgac
aatgtgtgcattgaggcactaagtgttaatgtgaggacgcagacacttgatggggcgtca
cggaatctgagtaggatgtcccaggagattgagaggttaaaggcaaccgatgctggtcga
ctgcgtgcagagtacaacaggcttgttgatggtttggcacaaaggggggaccttcctact
ggaaacacatggctagcaaatcctgccttgcctgatgacatactaaaggaagcagtacct
ggaaatataaggcgcgcagagcactttttgtcagttttgcgtaggtttgtacaatatctt
aaagggcgaatgcaaacagaaaatgttgagaaggaggggcctgttacatttgttgcatca
atcaattcacaagtaggaattgaccagaaaatgctgaagttttgttatgatcgacttcac
tctcttatgttgaccctggagatcaccgacacagatgaatttctccacatccaaacaatc
tgtgatctggcaactcttgtggggacctacactcgaggattttctattataattgaacct
tttgatgaaaggatgccacacatacctgatcctgttcttcagctttgttgtcacgatgct
tctcttgccataaagcctgtatttgagcgatttcagtcagttgttattacatctgggaca
ctgagccccattgatctatacccccgtcttctcaatttcaatcctgtggtgagccgaagc
tttacaatatccttaactagggattgcatatgcccaatggttctcactcgtggaagtgat
caacttccagtgagcacaaaatatgatcttagaagtgaccctggtgtagagaaaaattat
ggcaaacttttgctagaaatggcatctgttgttccagatggaatcgtgtgcttttttgtc
agttattcttacatggatggaattgttaatagttggcatgaatctggaattctaaaggaa
attatgaaacataaactggttttcatagagacccatgatgttgttgaaactacacttgcg
ttagacaattatcgtcgagcttgtgattctggaagaggtgccgtctttttctcagtagcc
aggggaaaagtagcagaaggtatagattttgatagacattacggccgacttgttatcatg
tttggcatcccatttcagtatacattgagcaggatattactagcacgattggagtattta
cgggaaactttccagataaaggagggtgattttttgacattcgatgctttgaggcaagct
gcccaatgtgtcggacgagttatcaggtcaaaagcagattatgggatgatgattttcgct
gacaagagatatagtcgtcacgacaagcgatcgaagctgcctagttggatactctcacat
ctacgcgatgcacatctgaacttgagtaccgacatggctgtgcatattgcacgagagttc
ttgaggaagatggctcagccgtacgataagagtggagcaatgggtaaaagaacccttctt
tcacaagaagacttggagaagatggtcaatggagttgaggaaatggtgttttga
DBGET
integrated database retrieval system
